AT5G62570.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.951 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Calmodulin binding protein-like | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Calmodulin binding protein-like; CONTAINS InterPro DOMAIN/s: Calmodulin binding protein-like (InterPro:IPR012416); BEST Arabidopsis thaliana protein match is: Calmodulin-binding protein (TAIR:AT4G25800.2); Has 287 Blast hits to 280 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 287; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:25114988..25116967 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 53538.80 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.37 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.25 | ||||||||||||||||||||||||||||||||||||||||
| Length | 476 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRLQTVKHFL EPVLEPLIRK VVKEEVELAL GKHLAGIKWI CEKETHPLES RNLQLKFLNN LSLPVFTSAR IEGDEGQAIR VGLIDPSTGQ IFSSGPASSA 101: KLEVFVVEGD FNSVSDWTDE DIRNNIVRER EGKKPLLNGN VFAVLNDGIG VMDEISFTDN SSWTRSRKFR LGVRIVDQFD YVKIREAITE SFVVRDHRGE 201: LYKKHHPPSL FDEVWRLEKI GKDGAFHRRL NLSNINTVKD FLTHFHLNSS KLRQVLGTGM SSKMWEITLD HARSCVLDSS VHVYQAPGFQ KKTAVVFNVV 301: AQVLGLLVDF QYIPAEKLSE IEKAQAEVMV IDALSHLNEV ISYDDEVSMM RNVLNAPASQ GSVAGIDYSG LSLTSLDGYG FVSSLHNTAE CSGKHSDDVD 401: MEVTPHGLYE DYDNLWNCSH ILGLEEPQSE LQSALDDFMS QKNASVGGKA HSKRWTKLFS VSRWLSVFKY VKLGKI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)