AT5G11250.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Disease resistance protein (TIR-NBS-LRR class) | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Disease resistance protein (TIR-NBS-LRR class); FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane, chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT2G14080.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:3587978..3591960 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 134227.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.57 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.09 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1189 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MASSFFLTTV AAAIGFFTLL RKLRFHHDNK EKKSTSLSPS SSPSSLSPSS VPPPSSSCIW THQVFPSFSG EDVRRDFLSH IQMEFQRMGI TPFVDNEIKR 0101: GESIGPELLR AIRGSKIAII LLSRNYASSK WCLDELVEIM KCREEYGQTV MAIFYKVDPS DVKNLTGDFG KVFRKTCAGK PKKDIGRWRQ AWEKVATVAG 0201: YHSINWDNEA AMIKKIATDI SNILINSTPS RDFDGLVGMR AHLEKMKPLL CLDTDEVRII GIWGPPGIGK TTIARVVYNQ LSHSFQLSVF MENIKANYTR 0301: PTGSDDYSAK LQLQQMFMSQ ITKQKDIEIP HLGVAQDRLK DKKVLVVLDG VNQSVQLDAM AKEAWWFGPG SRIIITTQDQ KLFRAHGINH IYKVDFPPTE 0401: EALQIFCMYA FGQNSPKDGF QNLAWKVINL AGNLPLGLRI MGSYFRGMSR EEWKKSLPRL ESSLDADIQS ILKFSYDALD DEDKNLFLHI ACFFNGKEIK 0501: ILEEHLAKKF VEVRQRLNVL AEKSLISFSN WGTIEMHKLL AKLGGEIVRN QSIHEPGQRQ FLFDGEEICD VLNGDAAGSK SVIGIDFHYI IEEEFDMNER 0601: VFEGMSNLQF LRFDCDHDTL QLSRGLSYLS RKLQLLDWIY FPMTCLPSTV NVEFLIELNL THSKLDMLWE GVKPLHNLRQ MDLSYSVNLK ELPDLSTAIN 0701: LRKLILSNCS SLIKLPSCIG NAINLEDLDL NGCSSLVELP SFGDAINLQK LLLRYCSNLV ELPSSIGNAI NLRELDLYYC SSLIRLPSSI GNAINLLILD 0801: LNGCSNLLEL PSSIGNAINL QKLDLRRCAK LLELPSSIGN AINLQNLLLD DCSSLLELPS SIGNATNLVY MNLSNCSNLV ELPLSIGNLQ KLQELILKGC 0901: SKLEDLPINI NLESLDILVL NDCSMLKRFP EISTNVRALY LCGTAIEEVP LSIRSWPRLD ELLMSYFDNL VEFPHVLDII TNLDLSGKEI QEVPPLIKRI 1001: SRLQTLILKG YRKVVSLPQI PDSLKWIDAE DCESLERLDC SFHNPEITLF FGKCFKLNQE ARDLIIQTPT KQAVLPGREV PAYFTHRASG GSLTIKLNER 1101: PLPTSMRYKA CILLVRIGDY GAHDRDKWLH VAFGVRSTTL GHIIYSGLTE HLYTFEIEEK VTSSELVFEF KVENGNHWKI GECGLRQLS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)