AT1G63740.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.448 plasma membrane 0.410 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Disease resistance protein (TIR-NBS-LRR class) family | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT1G63730.1); Has 16502 Blast hits to 13158 proteins in 513 species: Archae - 4; Bacteria - 732; Metazoa - 493; Fungi - 36; Plants - 15002; Viruses - 2; Other Eukaryotes - 233 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:23645525..23648807 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 113504.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.54 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.24 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 992 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MFDDQAIERG QTISPELTRG IRESRISIVV LSKNYASSSW CLDELLEILK CKEDIGQIVM TVFYGVDPSD VRKQTGDILK VFKKTCSGKT EEKRRRWSQA 101: LNDVGNIAGE HFLNWDNESK MMEKIARDIS NKVNTTISRD FEDMVGVETH LEKIQSLLHL DNDDEAMIVG IYGPAGIGKT TIARALHSLL SDRFQLTCFM 201: ENLRGSYNSS LDEYGLKLQL QEQLLSKILN QTGMRVYNLS AIQGMLCDQK VLIILDDVDD LKQLEALANE TKWFGPGSRV VVTTENQELL KQHDDIKNTY 301: YVDFPTQKEA RQIFCRYGFK QSTPQDGFEN LSERVIKLCS KLPLGLSVMG LYLRKKTEDD WEDILHRLES SFDSVDRNIE RVLRVGYDGL HEKDQLLFLL 401: IAFFFNYKDD DHVKAMLADN NLNVRLGLKT LEYKSLIQRS SGGNIVMHKL LQQVGREAVQ RQEPWKRQIL IDAHEICNVL ETDSGCANVM GISFNVSTIP 501: NGVHISAKAF QNMRNLRFLS IYETRRDVNL RVNVPDDMDF PHRLRSLHWE VYPGKSLPST FRPEYLVELN LQNNKLEKLW EGTQPLTNLN KLELCGSLRL 601: KELPDLSSAT NLKRLDLTGC WSLVEIPSSV GNLHKLEELE MNLCLQLQVV PTHFNLASLR SLRMLGCWEL RKFPGISTNI TSLVIGDAML EEMLESIRLW 701: SCLETLVVYG SVITHNFWAV TLIEKMGTDI ERIPDCIKDL PALKSLYIGG CPKLFSLPEL PGSLRRLTVE TCESLKTVSF PIDSPIVSFS FPNCFELGEE 801: ARRVITQKAG QMIAYLPGRE IPAEFVHRAI GDSLTIRSSF CSIFRICVVV SPKSEMKEEY VGFMCRKRIN GCPIGDNLFK AQLRKLQAEH LFIFQFEFLE 901: EDGWLEQDNE VLFKFTTSSE ELDIIECGIQ ILTGETNRNI STYGSYESRS EQVSEYEDGY HSDRRLEFHE QKSLPGWGFC GIFHGFLRCF MV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)