suba logo
AT5G38850.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
mitochondrion 0.905
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Disease resistance protein (TIR-NBS-LRR class)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Disease resistance protein (TIR-NBS-LRR class); FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT2G16870.1); Has 22386 Blast hits to 16686 proteins in 703 species: Archae - 22; Bacteria - 1475; Metazoa - 2460; Fungi - 122; Plants - 17655; Viruses - 0; Other Eukaryotes - 652 (source: NCBI BLink).
Protein Annotations
eggNOG:COG4886eggNOG:ENOG410IGA8EMBL:AB009048EMBL:CP002688
EnsemblPlants:AT5G38850EnsemblPlants:AT5G38850.1entrez:833876Gene3D:3.40.50.10140
Gene3D:3.40.50.300Gene3D:3.80.10.10GeneID:833876GO:GO:0005524
GO:GO:0007165GO:GO:0043531Gramene:AT5G38850.1hmmpanther:PTHR11017
hmmpanther:PTHR11017:SF20HOGENOM:HOG000064702InterPro:IPR000157InterPro:IPR001611
InterPro:IPR002182InterPro:IPR003593InterPro:IPR011713InterPro:IPR011991
InterPro:IPR027417InterPro:IPR032675KEGG:ath:AT5G38850OMA:MASARTW
Pfam:PF00931Pfam:PF01582Pfam:PF07725Pfscan:PS50104
Pfscan:PS51450PhylomeDB:Q9FMB7PROSITE:PS50104PROSITE:PS51450
Proteomes:UP000006548RefSeq:NP_198701.1SMART:SM00255SMART:SM00382
SMR:Q9FMB7STRING:3702.AT5G38850.1SUPFAM:SSF46785SUPFAM:SSF52058
SUPFAM:SSF52200SUPFAM:SSF52540TAIR:AT5G38850UniGene:At.43698
UniProt:Q9FMB7
Coordinates (TAIR10) chr5:+:15555187..15558430
Molecular Weight (calculated) 113058.00 Da
IEP (calculated) 6.51
GRAVY (calculated) -0.27
Length 986 amino acids
Sequence (TAIR10)
(BLAST)
001: MASARTWRYN VFPSFHGGDI RKTFLSHLRK QFNSNGITMF DDQGIERSQT IAPALIQAIR ESRISIVVLS KNYASSSWCL NELVEILKCK DVVMPIFYEV
101: DPSDVRKQTG DFGKAFKNSC KSKTKEERQR WIQALIFVGN IAGEHSLKWE NEADMIEKIA KDVSDKLNAT PSKDFDAFVG LEFHIRELSS LLYLDYEQVR
201: IVGICGPAGI GKTTIARALQ SLLSSNFQRS CFMENVRGSL NIGLDEYGLK LDLQERLLSK IMNQKGMRIE HLGTIRDRLH DQKVLIILDD VNDLDLYALA
301: DQTTWFGPGS RIIVTTEDNE LLQKHDINNV YHVDFPSRKE ALEIFCRCAF RQSSAPDTIL KLAERVTELC GNLPLGLCVI GSSLHGKTED EWEILIRRLE
401: ISLDRDNEAQ LRVGYDSLHE NEQALFLSIA VFFNYKDRQL VMAMLLDSNL DVEYGLRTLA NKSLIHISRN EKIVMHNLLQ HVGRQAIQRQ EPWKRHILID
501: ADEICNVLEN DTDARIVSGI SFDISRIGEV FLSERAFKRL CNLQFLRVFK TGYDEKNRVR IPENMEFPPR LRLLQWEAYP RRSLSLKLNL EYLVELDMEG
601: SLLEKLWDGT QPLANLKKMS LSSSWYLKKL PDLSNATNLE ELDLRACQNL VELPSSFSYL HKLKYLNMMG CRRLKEVPPH INLKSLELVN MYGCSRLKSF
701: PDISTNISSL DISYTDVEEL PESMTMWSRL RTLEIYKSRN LKIVTHVPLN LTYLDLSETR IEKIPDDIKN VHGLQILFLG GCRKLASLPE LPGSLLYLSA
801: NECESLESVS CPFNTSYMEL SFTNCFKLNQ EARRGIIQQS FSHGWASLPG RELPTDLYHR STGHSITVRL EGKTPFSAFF GFKVFLVISP NHDAEETSNS
901: PLFCPRIGKI GCSDDETPIY IIPKPRAEHL VMFHSDLHNK EKCHEVGNEI LFEFSNISDT YEIIECGVRF YTDEQVKSVK GEMNMK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)