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AT2G01860.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
EMBRYO DEFECTIVE 975 (EMB975); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: LATERAL ORGAN JUNCTION (TAIR:AT2G39230.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
BioGrid:120DNASU:814717eggNOG:ENOG410Z7Z7eggNOG:KOG4197
EMBL:AC007069EMBL:AK229094EMBL:BT015882EMBL:BT020200
EMBL:CP002685EnsemblPlants:AT2G01860EnsemblPlants:AT2G01860.1entrez:814717
GeneID:814717Genevisible:Q5XET4Gramene:AT2G01860.1hmmpanther:PTHR24015
hmmpanther:PTHR24015:SF642HOGENOM:HOG000238735InParanoid:Q5XET4InterPro:IPR002885
KEGG:ath:AT2G01860OMA:LRQQDCTPaxDb:Q5XET4Pfam:PF01535
Pfam:PF13812Pfam:Q5XET4Pfscan:PS51375PhylomeDB:Q5XET4
PIR:A84430PRIDE:Q5XET4PRO:PR:Q5XET4PROSITE:PS51375
ProteinModelPortal:Q5XET4Proteomes:UP000006548RefSeq:NP_178295.2SMR:Q5XET4
STRING:3702.AT2G01860.1TAIR:AT2G01860tair10-symbols:EMB975UniGene:At.42461
UniGene:At.71241UniProt:Q5XET4
Coordinates (TAIR10) chr2:+:388283..389743
Molecular Weight (calculated) 55652.90 Da
IEP (calculated) 9.67
GRAVY (calculated) -0.32
Length 486 amino acids
Sequence (TAIR10)
(BLAST)
001: MILHCPVSLS LSFHLNLRTS RIGNIGVTRV NASQRNHSKK LTKNLRNPRR TKLPPDFGVN LFLRKPKIEP LVIDDDDEQV QESVNDDDDA VVWEPEEIEA
101: ISSLFQKRIP QKPDKPSRVR PLPLPQPHKL RPLGLPTPKK NIIRSPALSS VSKQVYKDPS FLIGLAREIK SLPSSDADVS LVLNKWVSFL RKGSLSTTIR
201: ELGHMGLPER ALQTYHWAEK HSHLVPDNRI LASTIQVLAK HHELKLLKFD NSLASKNVIE AMIKGCIEGG WLNLARKLIL ISKSNNRILD SSVYVKMILE
301: IAKNPDKYHL VVALLEELKK REDLKLSQQD CTSIMKICVK LGEFELVESL FDWFKASNRE PSVVMYTTMI HSRYSEQKYR EAMSVVWEME ESNCLLDLPA
401: YRVVIKLFVA LDDLGRAMRY YSKLKEAGFS PTYDIYRDMI SVYTASGRLT KCKEICKEVE DAGLRLDKDT SFRLLQLEKQ TMSLLH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)