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AT4G21170.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G53700.1); Has 7405 Blast hits to 3644 proteins in 112 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 6; Plants - 7339; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).
Protein Annotations
EnsemblPlants:AT4G21170EnsemblPlants:AT4G21170.1entrez:827865hmmpanther:PTHR24015
hmmpanther:PTHR24015:SF637Pfam:PF01535Pfam:PF13041Pfscan:PS51375
SUPFAM:SSF81901TIGRfam:TIGR00756
Coordinates (TAIR10) chr4:-:11286756..11288513
Molecular Weight (calculated) 63230.30 Da
IEP (calculated) 8.55
GRAVY (calculated) -0.14
Length 551 amino acids
Sequence (TAIR10)
(BLAST)
001: MVLIHTSVGF FKRFSTSATP STSSASDWKT QQTLFRVATE ISSILLQRRN WITHLQYVKS KLPRSTLTSP VFLQILRETR KCPKTTLDFF DFAKTHLRFE
101: PDLKSHCRVI EVAAESGLLE RAEMLLRPLV ETNSVSLVVG EMHRWFEGEV SLSVSLSLVL EYYALKGSHH NGLEVFGFMR RLRLSPSQSA YNSLLGSLVK
201: ENQFRVALCL YSAMVRNGIV SDELTWDLIA QILCEQGRSK SVFKLMETGV ESCKIYTNLV ECYSRNGEFD AVFSLIHEMD DKKLELSFCS YGCVLDDACR
301: LGDAEFIDKV LCLMVEKKFV TLGDSAVNDK IIERLCDMGK TFASEMLFRK ACNGETVRLW DSTYGCMLKA LSRKKRTKEA VDVYRMICRK GITVLDESCY
401: IEFANALCRD DNSSEEEEEL LVDVIKRGKE DGNPQRSFLI RLWKWRSGKL EKALVLHEKI KKMKGSLDVN AYNAVLDRLM MRQKEMVEEA VVVFEYMKEI
501: NSVNSKSFTI MIQGLCRVKE MKKAMRSHDE MLRLGLKPDL VTYKRLILGF K
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)