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AT4G33495.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ubiquitin carboxyl-terminal hydrolase family protein
Curator
Summary (TAIR10)
A member of the RPD gene family - there are13 annotated genes and one EST encoding RPD1-like proteins in Arabidopsis. Shows no homology to any protein of known function. Abundant expression found in the shoot apex and the root. rpd1 mutant is a temperature-sensitive mutant isolated on the basis of the impairment in adventitious roots formation in hypocotyl region. Also, disruption of the RPD1 gene by a T-DNA insertion caused embryogenesis arrest at the globular to transition stages. This phenotype is consistent with the hypothesized function of RPD1 in the maintenance of active cell proliferation.
Computational
Description (TAIR10)
ROOT PRIMORDIUM DEFECTIVE 1 (RPD1); CONTAINS InterPro DOMAIN/s: RNA recognition domain, plant (InterPro:IPR021099); BEST Arabidopsis thaliana protein match is: Ubiquitin carboxyl-terminal hydrolase family protein (TAIR:AT5G45790.2); Has 413 Blast hits to 409 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 413; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IEGWeggNOG:ENOG410YAEMEMBL:AB189464EMBL:AK118818
EMBL:AL035678EMBL:CP002687EnsemblPlants:AT4G33495EnsemblPlants:AT4G33495.1
entrez:829487GeneID:829487GO:GO:0008285GO:GO:0010102
Gramene:AT4G33495.1HOGENOM:HOG000243533InParanoid:Q689D6InterPro:IPR021099
KEGG:ath:AT4G33495OMA:KIAVWKWPaxDb:Q689D6Pfam:PF11955
Pfam:Q689D6PhylomeDB:Q689D6PRIDE:Q689D6PRO:PR:Q689D6
Proteomes:UP000006548RefSeq:NP_680759.1STRING:3702.AT4G33495.1TAIR:AT4G33495
tair10-symbols:RPD1UniGene:At.31579UniProt:Q689D6
Coordinates (TAIR10) chr4:-:16111349..16112578
Molecular Weight (calculated) 48289.00 Da
IEP (calculated) 10.03
GRAVY (calculated) -0.41
Length 409 amino acids
Sequence (TAIR10)
(BLAST)
001: MKLFLRNAFK TLNPKRKLAT TILPSINLIL VKPFSQSTTI PKKQDRVRDH GYDNYMEVEK KIRKVVKFHS LILSQPNHTI AISLLDTLAR RLGLGFKQHE
101: PGAFLLKFPH VFEIYEHPVQ RILYCRLTRK ALDQIRHEHE AVLDQIPDAV TRLRKLVMMS NTGRIRLEHV RIARTEFGLP EDFEYSVILK HPQFFRLIDG
201: EETRDKYIEI VEKDPNLSIC AIERVREIEY RTKGIDAEDV RFSFVVNFPP GFKIGKYFRI AVWKWQRLPY WSPYEDISGY DLRSMEAQNR LEKRSVACIH
301: ELLSLTVEKK ITLERIAHFR NVMNLPKKLK EFLLQHQGIF YISTRGNYGK LHTVFLREGY KRGELVEPND VYLARRRLAE LVLMSPRKAK VDAELVRYRD
401: GLDDEDDVE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)