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AT1G80150.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: fruit; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G36680.1); Has 20922 Blast hits to 6391 proteins in 198 species: Archae - 3; Bacteria - 20; Metazoa - 73; Fungi - 116; Plants - 20269; Viruses - 0; Other Eukaryotes - 441 (source: NCBI BLink).
Protein Annotations
BioGrid:29573eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC009322
EMBL:AK119070EMBL:BT005353EMBL:CP002684EnsemblPlants:AT1G80150
EnsemblPlants:AT1G80150.1entrez:844355GeneID:844355GO:GO:0005739
Gramene:AT1G80150.1hmmpanther:PTHR24015hmmpanther:PTHR24015:SF439HOGENOM:HOG000242885
InParanoid:Q8GW57IntAct:Q8GW57InterPro:IPR002885iPTMnet:Q8GW57
KEGG:ath:AT1G80150OMA:RMPEHALPaxDb:Q8GW57Pfam:PF01535
Pfam:PF12854Pfam:PF13041Pfam:Q8GW57Pfscan:PS51375
PhylomeDB:Q8GW57PIR:B96833PRIDE:Q8GW57PRO:PR:Q8GW57
PROSITE:PS51375ProteinModelPortal:Q8GW57Proteomes:UP000006548RefSeq:NP_178132.1
SMR:Q8GW57STRING:3702.AT1G80150.1TAIR:AT1G80150TIGRfam:TIGR00756
TIGRFAMs:TIGR00756UniGene:At.33967UniProt:Q8GW57
Coordinates (TAIR10) chr1:+:30148738..30149931
Molecular Weight (calculated) 45509.00 Da
IEP (calculated) 9.77
GRAVY (calculated) -0.12
Length 397 amino acids
Sequence (TAIR10)
(BLAST)
001: MLSLRHIRRF CHFPSSAATG IAYVSTESNQ IQGLKPLEEP ALVKLKSERD PEKLYNLFKA NATNRLVIEN RFAFEDTVSR LAGAGRLDFI EDLLEHQKTL
101: PQGRREGFIV RIIMLYGKAG MTKQALDTFF NMDLYGCKRS VKSFNAALQV LSFNPDLHTI WEFLHDAPSK YGIDIDAVSF NIAIKSFCEL GILDGAYMAM
201: REMEKSGLTP DVVTYTTLIS ALYKHERCVI GNGLWNLMVL KGCKPNLTTF NVRIQFLVNR RRAWDANDLL LLMPKLQVEP DSITYNMVIK GFFLARFPDM
301: AERVYTAMHG KGYKPNLKIY QTMIHYLCKA GNFDLAYTMC KDCMRKKWYP NLDTVEMLLK GLVKKGQLDQ AKSIMELVHR RVPPFRSKQL LSLKSIL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)