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AT5G62370.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G65560.1); Has 62242 Blast hits to 13624 proteins in 288 species: Archae - 4; Bacteria - 32; Metazoa - 555; Fungi - 723; Plants - 59384; Viruses - 0; Other Eukaryotes - 1544 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AB019235EMBL:CP002688
EnsemblPlants:AT5G62370EnsemblPlants:AT5G62370.1entrez:836358Gene3D:1.25.40.10
GeneID:836358Gramene:AT5G62370.1hmmpanther:PTHR24015hmmpanther:PTHR24015:SF656
HOGENOM:HOG000090844InParanoid:Q9LVA2InterPro:IPR002885InterPro:IPR011990
KEGG:ath:AT5G62370OMA:IAMCSEGPaxDb:Q9LVA2Pfam:PF01535
Pfam:PF13041Pfam:PF13812Pfam:Q9LVA2Pfscan:PS51375
PhylomeDB:Q9LVA2PRIDE:Q9LVA2PRO:PR:Q9LVA2PROSITE:PS51375
ProteinModelPortal:Q9LVA2Proteomes:UP000006548RefSeq:NP_201043.1SMR:Q9LVA2
STRING:3702.AT5G62370.1SUPFAM:SSF81901TAIR:AT5G62370TIGRfam:TIGR00756
TIGRFAMs:TIGR00756UniGene:At.65697UniProt:Q9LVA2
Coordinates (TAIR10) chr5:-:25041901..25044849
Molecular Weight (calculated) 110274.00 Da
IEP (calculated) 7.64
GRAVY (calculated) 0.06
Length 982 amino acids
Sequence (TAIR10)
(BLAST)
001: MLKAKALCYR FFKSRKATTC ALSSELFPST SAAVFSAASG DHRSRCLSLI VKLGRRGLLD SAREVIRRVI DGSSSISEAA LVADFAVDNG IELDSSCYGA
101: LIRKLTEMGQ PGVAETFYNQ RVIGNGIVPD SSVLDSMVFC LVKLRRFDEA RAHLDRIIAS GYAPSRNSSS LVVDELCNQD RFLEAFHCFE QVKERGSGLW
201: LWCCKRLFKG LCGHGHLNEA IGMLDTLCGM TRMPLPVNLY KSLFYCFCKR GCAAEAEALF DHMEVDGYYV DKVMYTCLMK EYCKDNNMTM AMRLYLRMVE
301: RSFELDPCIF NTLIHGFMKL GMLDKGRVMF SQMIKKGVQS NVFTYHIMIG SYCKEGNVDY ALRLFVNNTG SEDISRNVHC YTNLIFGFYK KGGMDKAVDL
401: LMRMLDNGIV PDHITYFVLL KMLPKCHELK YAMVILQSIL DNGCGINPPV IDDLGNIEVK VESLLGEIAR KDANLAAVGL AVVTTALCSQ RNYIAALSRI
501: EKMVNLGCTP LPFSYNSVIK CLFQENIIED LASLVNIIQE LDFVPDVDTY LIVVNELCKK NDRDAAFAII DAMEELGLRP TVAIYSSIIG SLGKQGRVVE
601: AEETFAKMLE SGIQPDEIAY MIMINTYARN GRIDEANELV EEVVKHFLRP SSFTYTVLIS GFVKMGMMEK GCQYLDKMLE DGLSPNVVLY TALIGHFLKK
701: GDFKFSFTLF GLMGENDIKH DHIAYITLLS GLWRAMARKK KRQVIVEPGK EKLLQRLIRT KPLVSIPSSL GNYGSKSFAM EVIGKVKKSI IPNLYLHNTI
801: ITGYCAAGRL DEAYNHLESM QKEGIVPNLV TYTILMKSHI EAGDIESAID LFEGTNCEPD QVMYSTLLKG LCDFKRPLDA LALMLEMQKS GINPNKDSYE
901: KLLQCLCYSR LTMEAVKVVK DMAALDIWPR SINHTWLIYI LCEEKKLREA RALFAIMVQS GRSLLNCTKP GLLKMLNQNQ QL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)