AT1G16830.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G53700.1); Has 39592 Blast hits to 12738 proteins in 255 species: Archae - 3; Bacteria - 24; Metazoa - 191; Fungi - 211; Plants - 38370; Viruses - 0; Other Eukaryotes - 793 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:5760793..5762619 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 69672.90 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.76 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.02 | ||||||||||||||||||||||||||||||||||||||||
| Length | 608 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLWRCNWVKQ RKRILNTLSF SSIHGQYPRE YTAAKPLTHD NVYSCLRESP ADLKTLNFFF WCAKQNNYFH DDRAFDHMVG VVEKLTREYY SIDRIIERLK 101: ISGCEIKPRV FLLLLEIFWR GHIYDKAIEV YTGMSSFGFV PNTRAMNMMM DVNFKLNVVN GALEIFEGIR FRNFFSFDIA LSHFCSRGGR GDLVGVKIVL 201: KRMIGEGFYP NRERFGQILR LCCRTGCVSE AFQVVGLMIC SGISVSVNVW SMLVSGFFRS GEPQKAVDLF NKMIQIGCSP NLVTYTSLIK GFVDLGMVDE 301: AFTVLSKVQS EGLAPDIVLC NLMIHTYTRL GRFEEARKVF TSLEKRKLVP DQYTFASILS SLCLSGKFDL VPRITHGIGT DFDLVTGNLL SNCFSKIGYN 401: SYALKVLSIM SYKDFALDCY TYTVYLSALC RGGAPRAAIK MYKIIIKEKK HLDAHFHSAI IDSLIELGKY NTAVHLFKRC ILEKYPLDVV SYTVAIKGLV 501: RAKRIEEAYS LCCDMKEGGI YPNRRTYRTI ISGLCKEKET EKVRKILREC IQEGVELDPN TKFQVYSLLS RYRGDFSEFR SVFEKWKSEF TENVDVSDSD 601: DELFVSVG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)