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AT1G04945.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.777
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : HIT-type Zinc finger family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
HIT-type Zinc finger family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, HIT-type (InterPro:IPR007529); Has 408 Blast hits to 406 proteins in 188 species: Archae - 0; Bacteria - 0; Metazoa - 130; Fungi - 151; Plants - 52; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).
Protein Annotations
EMBL:CP002684EnsemblPlants:AT1G04945EnsemblPlants:AT1G04945.1entrez:5007664
ExpressionAtlas:A8MRX6GeneID:5007664Gramene:AT1G04945.1hmmpanther:PTHR13483
hmmpanther:PTHR13483:SF3HOGENOM:HOG000015190InterPro:IPR007529KEGG:ath:AT1G04945
Pfam:PF04438Pfscan:PS51083PhylomeDB:A8MRX6PRIDE:A8MRX6
PROSITE:PS51083ProteinModelPortal:A8MRX6Proteomes:UP000006548RefSeq:NP_001077459.1
SMR:A8MRX6SUPFAM:SSF144232TAIR:AT1G04945UniGene:At.46000
UniGene:At.47479UniProt:A8MRX6
Coordinates (TAIR10) chr1:+:1400969..1402651
Molecular Weight (calculated) 42208.10 Da
IEP (calculated) 5.92
GRAVY (calculated) -0.64
Length 367 amino acids
Sequence (TAIR10)
(BLAST)
001: MKDSVCEECK QNPWKYKCPG CSIRSCALPC VKAHKQRTGC TGKRKFTDVV PLSKFDDNLL LSDYNMLEET KRVAESALRR RSQLCKNHYS YKLPYLLKSL
101: QSAAYSRRTK LWYLPSGMLK RENNQSRYDN RSKCISWTIE WRFHSTDVIL VDHGVGEDRN LCSVIKNHLK PGPWIHKLKP FCDVDLDSLK LFIRQYPKGA
201: KAPFKELDIK APLRKQLAKV VILEYPVIHV YLPSQSYEFK VIKDFNTTPN PNDSLYDGHG CTNGITFREE EIEEDDIDSF EPEVLGLMKQ MNYNPCLRVS
301: EKSKAEGVGT NNSNPQVDTT EQEDAGNMEL EFEQGLIDTY SDLFAEMNPD TDFIADGLDL EEGEIVE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)