AT2G39120.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 ASURE: mitochondrion What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Ubiquitin carboxyl-terminal hydrolase family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Ubiquitin carboxyl-terminal hydrolase family protein; LOCATED IN: mitochondrion; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition domain, plant (InterPro:IPR021099); BEST Arabidopsis thaliana protein match is: Ubiquitin carboxyl-terminal hydrolase family protein (TAIR:AT3G58520.1); Has 404 Blast hits to 398 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 404; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:16321794..16322957 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 45210.90 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.32 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.43 | ||||||||||||||||||||||||||||||||
| Length | 387 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLSIRRHAKT VASSCTNLTQ KRTYVDVYMK WKRDPYFDNI EHILRSSQLK SVVSLKNCIV QEPNRCIPIS AISKKTRQFD VSTKIAHFLR KFPSIFEEFV 101: GPEYNLPWFR LTPEATELDR QERVVYQTSA DDLRDRLKKL ILMSKDNVLP LSIVQGMKWY LGLPDDYLQF PDMNLDSSFR FVDMEDGVKG LAVDYNGGDK 201: VLSVLQKNAM KKRRGEVSLE EIEFPLFPSK GCRLRVKIED WLMEFQKLPY VSPYDDYSCL DPSSDIAEKR VVGFLHELLC LFVEHSAERK KLLCLKKHFG 301: LPQKVHKAFE RHPQIFYLSM KNKTCTAILR EPYRDKASVE THPVLGVRKK YIQLMKNSEL ILKSRRNSFG FRDEGVVDKD LDLDFEG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)