AT1G20300.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G77360.1); Has 44443 Blast hits to 14229 proteins in 312 species: Archae - 5; Bacteria - 69; Metazoa - 601; Fungi - 771; Plants - 41531; Viruses - 0; Other Eukaryotes - 1466 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:+:7029701..7031314 | ||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 61211.20 Da | ||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 8.31 | ||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.24 | ||||||||||||||||||||||||||||||||||||||||||||
Length | 537 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MALLRSKLHL SRTLSFISPL LPKTFSTSAT SLLSDHENDE SAATITAAVS VPISPLLTPE DTQTVEKFHS IIKDHYRKNP TSPNDAILNP SLTLHALSLD 101: FSQIETSQVS PSVVRCVIEK CGSVRHGIPL HQSLAFFNWA TSRDDYDHKS PHPYNEMIDL SGKVRQFDLA WHLIDLMKSR NVEISIETFT ILIRRYVRAG 201: LASEAVHCFN RMEDYGCVPD KIAFSIVISN LSRKRRASEA QSFFDSLKDR FEPDVIVYTN LVRGWCRAGE ISEAEKVFKE MKLAGIEPNV YTYSIVIDAL 301: CRCGQISRAH DVFADMLDSG CAPNAITFNN LMRVHVKAGR TEKVLQVYNQ MKKLGCEPDT ITYNFLIEAH CRDENLENAV KVLNTMIKKK CEVNASTFNT 401: IFRYIEKKRD VNGAHRMYSK MMEAKCEPNT VTYNILMRMF VGSKSTDMVL KMKKEMDDKE VEPNVNTYRL LVTMFCGMGH WNNAYKLFKE MVEEKCLTPS 501: LSLYEMVLAQ LRRAGQLKKH EELVEKMIQK GLVARPL |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)