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AT5G46920.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Intron maturase, type II family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Intron maturase, type II family protein; FUNCTIONS IN: RNA binding, RNA-directed DNA polymerase activity; INVOLVED IN: RNA-dependent DNA replication, RNA splicing; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Intron maturase, type II (InterPro:IPR000442), RNA-directed DNA polymerase (reverse transcriptase) (InterPro:IPR000477); BEST Arabidopsis thaliana protein match is: Intron maturase, type II family protein (TAIR:AT1G30010.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Y65VeggNOG:KOG1075EMBL:AB013394EMBL:CP002688
EnsemblPlants:AT5G46920EnsemblPlants:AT5G46920.1entrez:834738GeneID:834738
GO:GO:0005739GO:GO:0006397Gramene:AT5G46920.1hmmpanther:PTHR34047
hmmpanther:PTHR34047:SF1HOGENOM:HOG000243591InterPro:IPR024937KEGG:ath:AT5G46920
OMA:RWMEGKIPfam:PF01348PhylomeDB:Q9FJR9Proteomes:UP000006548
RefSeq:NP_199503.1STRING:3702.AT5G46920.1SUPFAM:SSF56672TAIR:AT5G46920
UniGene:At.8575UniProt:Q9FJR9
Coordinates (TAIR10) chr5:+:19053668..19055875
Molecular Weight (calculated) 85184.50 Da
IEP (calculated) 9.76
GRAVY (calculated) -0.54
Length 735 amino acids
Sequence (TAIR10)
(BLAST)
001: MRRSFSVLGP YKWLKPSSTY TNVYCFVTNP PLISNPNNGS AIFRYLSYFA PQQRRQQQQA PDPDDPANLL KEDGVSLCSQ MWLENFKEPD KTATNLTSYL
101: RRFELWVLAY QKVCCDELGA YVPRSSIQRS ALENLLALRN SVLDDRFKWG SRLDFYIKSP RDKTDYESLS KRKIKAILTT TQPTPFQDRI VQEVLLMILE
201: PIYESRFSQK SFAFRPGRTA HTVLRVIRRN FAGYLWYVKG DLSVVLDGMK VGFVISSLMR DVRDKKVIDL IKSALVTPVV TSKVEDGEKK KTKKRKYQKK
301: RVLAEDEPKP DPYWLETFFG FAPEEAGKSP QWGHCGILSP LLVNVCLDEL DRWMETKVKD FYRPSKSDVI WNNPEGEADQ GNTSWPEFVP TSGPDKTRKM
401: DYVRYGGHIL IGVRGPRADA ATLRKELIEF VDQKYMLRLD NENLPIEHIT KGIMFLDHVL CRRVVYPTLR YTATGGKIIS EKGVGTLLSV TASLKQCIKQ
501: FRKLLFIKGD RDPDPQPCFR MFHATQAHTN NQMNKFLTTI AEWYRFADNR KKIVNFCSYI IRGSLAKLYA AKYKLRSRAK VYKFANRNLS LPLLQKKGQS
601: PEYQNLLRMG LAESVDGLVY TRMSLVPETD YSPFPGNWRP EHEKFLIEYL TLDEPKTLEE QKRFIREKGL VSPQDYTSML VWNYKRNAIP MDQVSILKDQ
701: PFLLGSSSTY NRDNDDQKNK EEDEDSEDGL RIARM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)