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AT3G54980.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: LATERAL ORGAN JUNCTION (TAIR:AT2G39230.1); Has 66577 Blast hits to 14412 proteins in 313 species: Archae - 5; Bacteria - 80; Metazoa - 1084; Fungi - 1336; Plants - 61678; Viruses - 0; Other Eukaryotes - 2394 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AL049655EMBL:AL132970
EMBL:BT003973EMBL:CP002686EnsemblPlants:AT3G54980EnsemblPlants:AT3G54980.1
entrez:824663Gene3D:1.25.40.10GeneID:824663Genevisible:Q9SV46
GO:GO:0005739Gramene:AT3G54980.1hmmpanther:PTHR24015hmmpanther:PTHR24015:SF406
HOGENOM:HOG000082982InParanoid:Q9SV46InterPro:IPR002885InterPro:IPR011990
KEGG:ath:AT3G54980OMA:GVSCNDYPaxDb:Q9SV46Pfam:PF01535
Pfam:PF12854Pfam:PF13041Pfam:Q9SV46Pfscan:PS51375
PhylomeDB:Q9SV46PIR:T06722PRIDE:Q9SV46PRO:PR:Q9SV46
PROSITE:PS51375ProteinModelPortal:Q9SV46Proteomes:UP000006548RefSeq:NP_191058.1
SMR:Q9SV46STRING:3702.AT3G54980.1SUPFAM:SSF48452SUPFAM:SSF81901
TAIR:AT3G54980TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.43727
UniProt:Q9SV46
Coordinates (TAIR10) chr3:+:20370293..20372848
Molecular Weight (calculated) 95065.70 Da
IEP (calculated) 5.66
GRAVY (calculated) -0.16
Length 851 amino acids
Sequence (TAIR10)
(BLAST)
001: MRSLLVFRKI PSRIRLRNLR NNKPFCSQSQ FPKESENPSQ EQRLLVYGST SEENPVTSKV SLLSAKPEQK DDASVIDVLL NRRNNPEAAL RFYNWARPWR
101: GSFEDGDVFW VLIHILVSSP ETYGRASDLL IRYVSTSNPT PMASVLVSKL VDSAKSFGFE VNSRAFNYLL NAYSKDRQTD HAVDIVNQML ELDVIPFFPY
201: VNRTLSALVQ RNSLTEAKEL YSRMVAIGVD GDNVTTQLLM RASLREEKPA EALEVLSRAI ERGAEPDSLL YSLAVQACCK TLDLAMANSL LREMKEKKLC
301: VPSQETYTSV ILASVKQGNM DDAIRLKDEM LSDGISMNVV AATSLITGHC KNNDLVSALV LFDKMEKEGP SPNSVTFSVL IEWFRKNGEM EKALEFYKKM
401: EVLGLTPSVF HVHTIIQGWL KGQKHEEALK LFDESFETGL ANVFVCNTIL SWLCKQGKTD EATELLSKME SRGIGPNVVS YNNVMLGHCR QKNMDLARIV
501: FSNILEKGLK PNNYTYSILI DGCFRNHDEQ NALEVVNHMT SSNIEVNGVV YQTIINGLCK VGQTSKAREL LANMIEEKRL CVSCMSYNSI IDGFFKEGEM
601: DSAVAAYEEM CGNGISPNVI TYTSLMNGLC KNNRMDQALE MRDEMKNKGV KLDIPAYGAL IDGFCKRSNM ESASALFSEL LEEGLNPSQP IYNSLISGFR
701: NLGNMVAALD LYKKMLKDGL RCDLGTYTTL IDGLLKDGNL ILASELYTEM QAVGLVPDEI IYTVIVNGLS KKGQFVKVVK MFEEMKKNNV TPNVLIYNAV
801: IAGHYREGNL DEAFRLHDEM LDKGILPDGA TFDILVSGQV GNLQPVRAAS L
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)