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AT1G71210.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G06920.1); Has 23089 Blast hits to 6463 proteins in 161 species: Archae - 1; Bacteria - 0; Metazoa - 25; Fungi - 48; Plants - 22668; Viruses - 0; Other Eukaryotes - 347 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC016972EMBL:AK117109
EMBL:BT005973EMBL:CP002684EnsemblPlants:AT1G71210EnsemblPlants:AT1G71210.1
entrez:843461GeneID:843461Genevisible:Q8GZA6Gramene:AT1G71210.1
hmmpanther:PTHR24015hmmpanther:PTHR24015:SF414HOGENOM:HOG000083211InParanoid:Q8GZA6
InterPro:IPR002885iPTMnet:Q8GZA6KEGG:ath:AT1G71210OMA:YEPNRWT
PaxDb:Q8GZA6Pfam:PF01535Pfam:PF13041Pfam:PF13812
Pfam:Q8GZA6Pfscan:PS51375PhylomeDB:Q8GZA6PRIDE:Q8GZA6
PRO:PR:Q8GZA6PROSITE:PS51375ProteinModelPortal:Q8GZA6Proteomes:UP000006548
RefSeq:NP_177277.2SMR:Q8GZA6STRING:3702.AT1G71210.1TAIR:AT1G71210
TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.35215UniProt:Q8GZA6
Coordinates (TAIR10) chr1:-:26838850..26841489
Molecular Weight (calculated) 100437.00 Da
IEP (calculated) 8.17
GRAVY (calculated) -0.15
Length 879 amino acids
Sequence (TAIR10)
(BLAST)
001: MLRCWSVTVE RSCEGMLLRR RILSLSASSF RNFTSGNNGD AIPFSTFTKP SSSIAPGDFL VREWKDWFKH RDVKQSHQLI DRIFDILRAP SNDGDDRAFY
101: LHLSNLRLRL TEKFVLDVLS HTRYDILCCL KFFDWAARQP GFHHTRATFH AIFKILRGAK LVTLMIDFLD RSVGFESCRH SLRLCDALVV GYAVAGRTDI
201: ALQHFGNMRF RGLDLDSFGY HVLLNALVEE KCFDSFDVIF DQISVRGFVC AVTHSILVKK FCKQGKLDEA EDYLRALLPN DPAGCGSGLG ILVDALCSKR
301: KFQEATKLLD EIKLVGTVNM DRAYNIWIRA LIKAGFLNNP ADFLQKISPL EGCELEVFRY NSMVFQLLKE NNLDGVYDIL TEMMVRGVSP NKKTMNAALC
401: FFCKAGFVDE ALELYRSRSE IGFAPTAMSY NYLIHTLCAN ESVEQAYDVL KGAIDRGHFL GGKTFSTLTN ALCWKGKPDM ARELVIAAAE RDLLPKRIAG
501: CKIISALCDV GKVEDALMIN ELFNKSGVDT SFKMFTSLIY GSITLMRGDI AAKLIIRMQE KGYTPTRSLY RNVIQCVCEM ESGEKNFFTT LLKFQLSLWE
601: HKVQAYNLFI EGAGFAGKPK LARLVYDMMD RDGITPTVAS NILMLQSYLK NEKIADALHF FHDLREQGKT KKRLYQVMIV GLCKANKLDD AMHFLEEMKG
701: EGLQPSIECY EVNIQKLCNE EKYDEAVGLV NEFRKSGRRI TAFIGNVLLH NAMKSKGVYE AWTRMRNIED KIPEMKSLGE LIGLFSGRID MEVELKRLDE
801: VIEKCYPLDM YTYNMLLRMI VMNQAEDAYE MVERIARRGY VPNERTDMIL ERANRILEER NSRSNLGRNG WNSRQRQLE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)