AT1G79540.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: rna processing factor 2 (TAIR:AT1G62670.1); Has 52662 Blast hits to 14102 proteins in 281 species: Archae - 4; Bacteria - 51; Metazoa - 515; Fungi - 799; Plants - 49672; Viruses - 0; Other Eukaryotes - 1621 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:29920334..29922676 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 88856.30 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.18 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.10 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 780 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKPQMFFRSV IQFYSKPSWM QRSYSSGNAE FNISGEVISI LAKKKPIEPA LEPLVPFLSK NIITSVIKDE VNRQLGFRFF IWASRRERLR SRESFGLVID 101: MLSEDNGCDL YWQTLEELKS GGVSVDSYCF CVLISAYAKM GMAEKAVESF GRMKEFDCRP DVFTYNVILR VMMREEVFFM LAFAVYNEML KCNCSPNLYT 201: FGILMDGLYK KGRTSDAQKM FDDMTGRGIS PNRVTYTILI SGLCQRGSAD DARKLFYEMQ TSGNYPDSVA HNALLDGFCK LGRMVEAFEL LRLFEKDGFV 301: LGLRGYSSLI DGLFRARRYT QAFELYANML KKNIKPDIIL YTILIQGLSK AGKIEDALKL LSSMPSKGIS PDTYCYNAVI KALCGRGLLE EGRSLQLEMS 401: ETESFPDACT HTILICSMCR NGLVREAEEI FTEIEKSGCS PSVATFNALI DGLCKSGELK EARLLLHKME VGRPASLFLR LSHSGNRSFD TMVESGSILK 501: AYRDLAHFAD TGSSPDIVSY NVLINGFCRA GDIDGALKLL NVLQLKGLSP DSVTYNTLIN GLHRVGREEE AFKLFYAKDD FRHSPAVYRS LMTWSCRKRK 601: VLVAFNLWMK YLKKISCLDD ETANEIEQCF KEGETERALR RLIELDTRKD ELTLGPYTIW LIGLCQSGRF HEALMVFSVL REKKILVTPP SCVKLIHGLC 701: KREQLDAAIE VFLYTLDNNF KLMPRVCNYL LSSLLESTEK MEIVSQLTNR MERAGYNVDS MLRFEILKYH RHRKQVLIDL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)