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AT5G44230.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 0.830
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pentatricopeptide repeat (PPR) superfamily protein; EXPRESSED IN: embryo, leaf; EXPRESSED DURING: D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G29760.1); Has 34838 Blast hits to 13612 proteins in 233 species: Archae - 0; Bacteria - 9; Metazoa - 42; Fungi - 69; Plants - 34172; Viruses - 0; Other Eukaryotes - 546 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AB005239EMBL:CP002688
EMBL:DQ447037EnsemblPlants:AT5G44230EnsemblPlants:AT5G44230.1entrez:834446
Gene3D:1.25.40.10GeneID:834446Genevisible:Q9FFG8GO:GO:0008270
Gramene:AT5G44230.1hmmpanther:PTHR24015hmmpanther:PTHR24015:SF264HOGENOM:HOG000237569
InParanoid:Q9FFG8InterPro:IPR002885InterPro:IPR011990InterPro:IPR032867
KEGG:ath:AT5G44230OMA:DKHRFVEPaxDb:Q9FFG8Pfam:PF01535
Pfam:PF13041Pfam:PF14432Pfam:Q9FFG8Pfscan:PS51375
PhylomeDB:Q9FFG8PRIDE:Q9FFG8PRO:PR:Q9FFG8PROSITE:PS51375
ProteinModelPortal:Q9FFG8Proteomes:UP000006548RefSeq:NP_199236.1SMR:Q9FFG8
STRING:3702.AT5G44230.1SUPFAM:SSF48452TAIR:AT5G44230TIGRfam:TIGR00756
TIGRFAMs:TIGR00756UniGene:At.55349UniProt:Q9FFG8
Coordinates (TAIR10) chr5:+:17814336..17816309
Molecular Weight (calculated) 73674.40 Da
IEP (calculated) 7.78
GRAVY (calculated) -0.07
Length 657 amino acids
Sequence (TAIR10)
(BLAST)
001: MTVAHSHRFS TAVNPINISL LSKQLLQLGR TSNNSGTFSE ISNQKELLVS SLISKLDDCI NLNQIKQIHG HVLRKGLDQS CYILTKLIRT LTKLGVPMDP
101: YARRVIEPVQ FRNPFLWTAV IRGYAIEGKF DEAIAMYGCM RKEEITPVSF TFSALLKACG TMKDLNLGRQ FHAQTFRLRG FCFVYVGNTM IDMYVKCESI
201: DCARKVFDEM PERDVISWTE LIAAYARVGN MECAAELFES LPTKDMVAWT AMVTGFAQNA KPQEALEYFD RMEKSGIRAD EVTVAGYISA CAQLGASKYA
301: DRAVQIAQKS GYSPSDHVVI GSALIDMYSK CGNVEEAVNV FMSMNNKNVF TYSSMILGLA THGRAQEALH LFHYMVTQTE IKPNTVTFVG ALMACSHSGL
401: VDQGRQVFDS MYQTFGVQPT RDHYTCMVDL LGRTGRLQEA LELIKTMSVE PHGGVWGALL GACRIHNNPE IAEIAAEHLF ELEPDIIGNY ILLSNVYASA
501: GDWGGVLRVR KLIKEKGLKK TPAVSWVVDK NGQMHKFFPG NLNHPMSNKI QDKLEELVER LTVLGYQPDL SSVPYDVSDN AKRLILIQHT EKLALAFSLL
601: TTNRDSTITI MKNLRMCLDC HKFMRLASEV TGKVIIMRDN MRFHHFRSGD CSCGDFW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)