AT4G14050.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||||||
Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||
Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G68930.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||
Coordinates (TAIR10) | chr4:-:8103645..8105483 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 68040.40 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 8.13 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.01 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 612 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MLIPHYLHQL QLCARNRTLT TAKALHAHIV KLGIVQCCPL ANTLVNVYGK CGAASHALQV FDEMPHRDHI AWASVLTALN QANLSGKTLS VFSSVGSSSG 101: LRPDDFVFSA LVKACANLGS IDHGRQVHCH FIVSEYANDE VVKSSLVDMY AKCGLLNSAK AVFDSIRVKN TISWTAMVSG YAKSGRKEEA LELFRILPVK 201: NLYSWTALIS GFVQSGKGLE AFSVFTEMRR ERVDILDPLV LSSIVGACAN LAASIAGRQV HGLVIALGFD SCVFISNALI DMYAKCSDVI AAKDIFSRMR 301: HRDVVSWTSL IVGMAQHGQA EKALALYDDM VSHGVKPNEV TFVGLIYACS HVGFVEKGRE LFQSMTKDYG IRPSLQHYTC LLDLLGRSGL LDEAENLIHT 401: MPFPPDEPTW AALLSACKRQ GRGQMGIRIA DHLVSSFKLK DPSTYILLSN IYASASLWGK VSEARRKLGE MEVRKDPGHS SVEVRKETEV FYAGETSHPL 501: KEDIFRLLKK LEEEMRIRNG YVPDTSWILH DMDEQEKEKL LFWHSERSAV AYGLLKAVPG TPIRIVKNLR VCGDCHVVLK HISEITEREI IVRDATRYHH 601: FKGGKCSCND FW |
||||||||||||||||||||||||||||||||||||||||||||||||
See Also |
|
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)