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AT4G14050.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pentatricopeptide repeat (PPR) superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G68930.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AL161537EMBL:BX840233
EMBL:CP002687EMBL:Z97335EnsemblPlants:AT4G14050EnsemblPlants:AT4G14050.1
entrez:827041GeneID:827041Genevisible:O23266GO:GO:0005739
GO:GO:0008270GO:GO:0016020Gramene:AT4G14050.1hmmpanther:PTHR24015
hmmpanther:PTHR24015:SF111HOGENOM:HOG000237570InParanoid:O23266InterPro:IPR002885
InterPro:IPR032867KEGG:ath:AT4G14050OMA:KERQLFWPaxDb:O23266
Pfam:O23266Pfam:PF01535Pfam:PF13041Pfam:PF14432
Pfscan:PS51375PhylomeDB:O23266PIR:B85153PIR:F71401
PRIDE:O23266PRO:PR:O23266PROSITE:PS51375ProteinModelPortal:O23266
Proteomes:UP000006548RefSeq:NP_193141.2SMR:O23266STRING:3702.AT4G14050.1
TAIR:AT4G14050TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.49691
UniProt:O23266
Coordinates (TAIR10) chr4:-:8103645..8105483
Molecular Weight (calculated) 68040.40 Da
IEP (calculated) 8.13
GRAVY (calculated) -0.01
Length 612 amino acids
Sequence (TAIR10)
(BLAST)
001: MLIPHYLHQL QLCARNRTLT TAKALHAHIV KLGIVQCCPL ANTLVNVYGK CGAASHALQV FDEMPHRDHI AWASVLTALN QANLSGKTLS VFSSVGSSSG
101: LRPDDFVFSA LVKACANLGS IDHGRQVHCH FIVSEYANDE VVKSSLVDMY AKCGLLNSAK AVFDSIRVKN TISWTAMVSG YAKSGRKEEA LELFRILPVK
201: NLYSWTALIS GFVQSGKGLE AFSVFTEMRR ERVDILDPLV LSSIVGACAN LAASIAGRQV HGLVIALGFD SCVFISNALI DMYAKCSDVI AAKDIFSRMR
301: HRDVVSWTSL IVGMAQHGQA EKALALYDDM VSHGVKPNEV TFVGLIYACS HVGFVEKGRE LFQSMTKDYG IRPSLQHYTC LLDLLGRSGL LDEAENLIHT
401: MPFPPDEPTW AALLSACKRQ GRGQMGIRIA DHLVSSFKLK DPSTYILLSN IYASASLWGK VSEARRKLGE MEVRKDPGHS SVEVRKETEV FYAGETSHPL
501: KEDIFRLLKK LEEEMRIRNG YVPDTSWILH DMDEQEKEKL LFWHSERSAV AYGLLKAVPG TPIRIVKNLR VCGDCHVVLK HISEITEREI IVRDATRYHH
601: FKGGKCSCND FW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)