AT3G51320.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G62890.1); Has 32632 Blast hits to 12262 proteins in 174 species: Archae - 0; Bacteria - 0; Metazoa - 25; Fungi - 25; Plants - 32307; Viruses - 0; Other Eukaryotes - 275 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:19049853..19051445 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 58988.50 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.20 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.00 | ||||||||||||||||||||||||||||||||||||||||
| Length | 530 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAKASSIRQF VTSRFIVPGT GLLKGFKLVE DSNSITHLFQ VHARLITSGN FWDSSWAIRL LKSSSRFGDS SYTVSIYRSI GKLYCANPVF KAYLVSSSPK 101: QALGFYFDIL RFGFVPDSYT FVSLISCIEK TCCVDSGKMC HGQAIKHGCD QVLPVQNSLM HMYTCCGALD LAKKLFVEIP KRDIVSWNSI IAGMVRNGDV 201: LAAHKLFDEM PDKNIISWNI MISAYLGANN PGVSISLFRE MVRAGFQGNE STLVLLLNAC GRSARLKEGR SVHASLIRTF LNSSVVIDTA LIDMYGKCKE 301: VGLARRIFDS LSIRNKVTWN VMILAHCLHG RPEGGLELFE AMINGMLRPD EVTFVGVLCG CARAGLVSQG QSYYSLMVDE FQIKPNFGHQ WCMANLYSSA 401: GFPEEAEEAL KNLPDEDVTP ESTKWANLLS SSRFTGNPTL GESIAKSLIE TDPLNYKYYH LLMNIYSVTG RWEDVNRVRE MVKERKIGRI PGCGLVDLKE 501: IVHGLRLGCK EAEKVFTETS LEKCYSDSPS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)