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AT2G25580.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G32450.1); Has 21306 Blast hits to 10572 proteins in 176 species: Archae - 0; Bacteria - 9; Metazoa - 6; Fungi - 21; Plants - 21172; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC006053EMBL:AK175894
EMBL:CP002685EnsemblPlants:AT2G25580EnsemblPlants:AT2G25580.1entrez:817097
GeneID:817097Genevisible:Q680H3GO:GO:0008270Gramene:AT2G25580.1
hmmpanther:PTHR24015hmmpanther:PTHR24015:SF896HOGENOM:HOG000115621InParanoid:Q680H3
InterPro:IPR002885InterPro:IPR032867KEGG:ath:AT2G25580OMA:EPNVDVW
PaxDb:Q680H3Pfam:PF01535Pfam:PF14432Pfam:Q680H3
Pfscan:PS51375PhylomeDB:Q680H3PIR:B84650PRIDE:Q680H3
PRO:PR:Q680H3PROSITE:PS51375ProteinModelPortal:Q680H3Proteomes:UP000006548
RefSeq:NP_180129.2SMR:Q680H3STRING:3702.AT2G25580.1TAIR:AT2G25580
TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.52914UniProt:Q680H3
Coordinates (TAIR10) chr2:+:10888102..10889949
Molecular Weight (calculated) 69910.40 Da
IEP (calculated) 5.56
GRAVY (calculated) -0.36
Length 615 amino acids
Sequence (TAIR10)
(BLAST)
001: MYTKLSLFPR KSSSLLSIAN EKRIHQFLRN LCTAVERLDF GNSNDSSEMN PREGYNGRIQ NRTGSSGEVS ESIHTQSQSL GSNQGRNEQS WKQSPSLSNS
101: QVQSQYQGNW YGTNSDYQNG VGSSWHSGKT IDREVYDMIM EFDEYCIQEN VRVALTTMEK LEKKGYVMDF VRLLKLTQLC REGNVYYEVS VLEEAKVSVL
201: AKIRALVNNL EANYLKYYTD IMIEEYDAFC KHGKVKKALY TIDILASMNY VVDLSRLLRL AKICGEAEGL QEAKTVHGKI SASVSHLDLS SNHVLLEMYS
301: NCGLANEAAS VFEKMSEKNL ETWCIIIRCF AKNGFGEDAI DMFSRFKEEG NIPDGQLFRG IFYACGMLGD VDEGLLHFES MSRDYGIAPS IEDYVSLVEM
401: YALPGFLDEA LEFVERMPME PNVDVWETLM NLSRVHGNLE LGDYCAEVVE FLDPTRLNKQ SREGFIPVKA SDVEKESLKK RSGILHGVKS SMQEFRAGDT
501: NLPENDELFQ LLRNLKMHMV EVGYVAETRM ALHDIDQESK ETLLLGHSER IAFARAVLNS APRKPFTVIK NLRVCVDCHN ALKIMSDIVG REVITRDIKR
601: FHQMKNGACT CKDYW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)