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AT4G19440.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G55840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AL022580EMBL:AL161550
EMBL:AY056145EMBL:CP002687EnsemblPlants:AT4G19440EnsemblPlants:AT4G19440.1
EnsemblPlants:AT4G19440.2entrez:827685Gene3D:1.25.40.10GeneID:827685
Genevisible:Q940A6GO:GO:0009507Gramene:AT4G19440.1Gramene:AT4G19440.2
hmmpanther:PTHR24015hmmpanther:PTHR24015:SF824HOGENOM:HOG000143575InParanoid:Q940A6
InterPro:IPR002885InterPro:IPR011990KEGG:ath:AT4G19440PaxDb:Q940A6
Pfam:PF01535Pfam:PF12854Pfam:PF13041Pfam:Q940A6
Pfscan:PS51375PhylomeDB:Q940A6PIR:T05827PRIDE:Q940A6
PRO:PR:Q940A6PROSITE:PS51375ProteinModelPortal:Q940A6Proteomes:UP000006548
RefSeq:NP_001190771.1RefSeq:NP_567587.1SMR:Q940A6STRING:3702.AT4G19440.1
SUPFAM:SSF81901TAIR:AT4G19440TIGRfam:TIGR00756TIGRFAMs:TIGR00756
UniGene:At.22731UniProt:Q940A6
Coordinates (TAIR10) chr4:-:10602006..10604483
Molecular Weight (calculated) 93171.70 Da
IEP (calculated) 8.27
GRAVY (calculated) -0.07
Length 825 amino acids
Sequence (TAIR10)
(BLAST)
001: MTSSHFISFS PMDLRRLSRA SYLFTRRLKF IAKSRKCFHT SRYLQQCVHR PDKSEETSSD RHLHERLSSV LSKRSLDYEQ CKQLITVLSP LEFDRLFPEF
101: RSKVNPKTAL DFFRLASDSF SFSFSLRSYC LLIGLLLDAN LLSAARVVLI RLINGNVPVL PCGLRDSRVA IADAMASLSL CFDEEIRRKM SDLLIEVYCT
201: QFKRDGCYLA LDVFPVLANK GMFPSKTTCN ILLTSLVRAN EFQKCCEAFD VVCKGVSPDV YLFTTAINAF CKGGKVEEAV KLFSKMEEAG VAPNVVTFNT
301: VIDGLGMCGR YDEAFMFKEK MVERGMEPTL ITYSILVKGL TRAKRIGDAY FVLKEMTKKG FPPNVIVYNN LIDSFIEAGS LNKAIEIKDL MVSKGLSLTS
401: STYNTLIKGY CKNGQADNAE RLLKEMLSIG FNVNQGSFTS VICLLCSHLM FDSALRFVGE MLLRNMSPGG GLLTTLISGL CKHGKHSKAL ELWFQFLNKG
501: FVVDTRTSNA LLHGLCEAGK LDEAFRIQKE ILGRGCVMDR VSYNTLISGC CGKKKLDEAF MFLDEMVKRG LKPDNYTYSI LICGLFNMNK VEEAIQFWDD
601: CKRNGMLPDV YTYSVMIDGC CKAERTEEGQ EFFDEMMSKN VQPNTVVYNH LIRAYCRSGR LSMALELRED MKHKGISPNS ATYTSLIKGM SIISRVEEAK
701: LLFEEMRMEG LEPNVFHYTA LIDGYGKLGQ MVKVECLLRE MHSKNVHPNK ITYTVMIGGY ARDGNVTEAS RLLNEMREKG IVPDSITYKE FIYGYLKQGG
801: VLEAFKGSDE ENYAAIIEGW NKLIQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)