AT4G28010.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: rna processing factor 2 (TAIR:AT1G62670.1); Has 64686 Blast hits to 15009 proteins in 313 species: Archae - 9; Bacteria - 69; Metazoa - 819; Fungi - 1094; Plants - 60516; Viruses - 0; Other Eukaryotes - 2179 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:13930379..13932493 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 79114.20 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.71 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.08 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 704 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRFWTSAAAA EILRRDEHVV RKLLNPRVYS KLVNAFSETE TKLRSLCEDS NPQLKNAVSV FQQAVDSGSS LAFAGNNLMA KLVRSRNHEL AFSFYRKMLE 101: TDTFINFVSL SGLLECYVQM RKTGFAFGVL ALMLKRGFAF NVYNHNILLK GLCRNLECGK AVSLLREMRR NSLMPDVFSY NTVIRGFCEG KELEKALELA 201: NEMKGSGCSW SLVTWGILID AFCKAGKMDE AMGFLKEMKF MGLEADLVVY TSLIRGFCDC GELDRGKALF DEVLERGDSP CAITYNTLIR GFCKLGQLKE 301: ASEIFEFMIE RGVRPNVYTY TGLIDGLCGV GKTKEALQLL NLMIEKDEEP NAVTYNIIIN KLCKDGLVAD AVEIVELMKK RRTRPDNITY NILLGGLCAK 401: GDLDEASKLL YLMLKDSSYT DPDVISYNAL IHGLCKENRL HQALDIYDLL VEKLGAGDRV TTNILLNSTL KAGDVNKAME LWKQISDSKI VRNSDTYTAM 501: IDGFCKTGML NVAKGLLCKM RVSELQPSVF DYNCLLSSLC KEGSLDQAWR LFEEMQRDNN FPDVVSFNIM IDGSLKAGDI KSAESLLVGM SRAGLSPDLF 601: TYSKLINRFL KLGYLDEAIS FFDKMVDSGF EPDAHICDSV LKYCISQGET DKLTELVKKL VDKDIVLDKE LTCTVMDYMC NSSANMDLAK RLLRVTDDKE 701: ERDK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)