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AT1G13630.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.956
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G22470.1); Has 58870 Blast hits to 14575 proteins in 299 species: Archae - 3; Bacteria - 47; Metazoa - 773; Fungi - 914; Plants - 55536; Viruses - 0; Other Eukaryotes - 1597 (source: NCBI BLink).
Protein Annotations
BioGrid:23164eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC027134
EMBL:AC027656EMBL:CP002684EnsemblPlants:AT1G13630EnsemblPlants:AT1G13630.1
EnsemblPlants:AT1G13630.2entrez:837924GeneID:837924Genevisible:Q9LMY5
Gramene:AT1G13630.1Gramene:AT1G13630.2hmmpanther:PTHR24015hmmpanther:PTHR24015:SF309
InParanoid:Q9LMY5InterPro:IPR002885iPTMnet:Q9LMY5KEGG:ath:AT1G13630
PaxDb:Q9LMY5Pfam:PF01535Pfam:PF13041Pfam:Q9LMY5
Pfscan:PS51375PIR:D86269PRIDE:Q9LMY5PRO:PR:Q9LMY5
PROSITE:PS51375ProteinModelPortal:Q9LMY5Proteomes:UP000006548RefSeq:NP_001184987.1
RefSeq:NP_172820.4SMR:Q9LMY5STRING:3702.AT1G13630.1SUPFAM:SSF81901
TAIR:AT1G13630TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.51599
UniProt:Q9LMY5
Coordinates (TAIR10) chr1:-:4669784..4672826
Molecular Weight (calculated) 91208.10 Da
IEP (calculated) 7.35
GRAVY (calculated) -0.01
Length 806 amino acids
Sequence (TAIR10)
(BLAST)
001: MDDESLPTTN STSDHRGFYK EILFGMKKIG FREFLHGYHF RGLVSELRHV HVEEIMDELM SESSDLSVWF FKELRDIYAF RHSSFSTLLV SHVLAGQRRF
101: KELQVILEQL LQEEGTFRKW ESTGLVWDML LFLSSRLRMV DDSLYILKKM KDQNLNVSTQ SYNSVLYHFR ETDKMWDVYK EIKDKNEHTY STVVDGLCRQ
201: QKLEDAVLFL RTSEWKDIGP SVVSFNSIMS GYCKLGFVDM AKSFFCTVLK CGLVPSVYSH NILINGLCLV GSIAEALELA SDMNKHGVEP DSVTYNILAK
301: GFHLLGMISG AWEVIRDMLD KGLSPDVITY TILLCGQCQL GNIDMGLVLL KDMLSRGFEL NSIIPCSVML SGLCKTGRID EALSLFNQMK ADGLSPDLVA
401: YSIVIHGLCK LGKFDMALWL YDEMCDKRIL PNSRTHGALL LGLCQKGMLL EARSLLDSLI SSGETLDIVL YNIVIDGYAK SGCIEEALEL FKVVIETGIT
501: PSVATFNSLI YGYCKTQNIA EARKILDVIK LYGLAPSVVS YTTLMDAYAN CGNTKSIDEL RREMKAEGIP PTNVTYSVIF KGLCRGWKHE NCNHVLRERI
601: FEKCKQGLRD MESEGIPPDQ ITYNTIIQYL CRVKHLSGAF VFLEIMKSRN LDASSATYNI LIDSLCVYGY IRKADSFIYS LQEQNVSLSK FAYTTLIKAH
701: CVKGDPEMAV KLFHQLLHRG FNVSIRDYSA VINRLCRRHL MNCFPGQSNG VCCLISNERS FVYCPILSAN CRRHTLSVEK LSHEVLLKMK SQLGQKRTGE
801: SKGSGQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)