AT1G06710.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; LOCATED IN: mitochondrion; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G06920.1); Has 67223 Blast hits to 14860 proteins in 308 species: Archae - 6; Bacteria - 56; Metazoa - 772; Fungi - 1057; Plants - 62952; Viruses - 0; Other Eukaryotes - 2380 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:-:2056999..2060242 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 112773.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.32 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.06 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 997 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNKTVVRCLL SRSHHPLIHF STNLSLLHRV FTCSRYLTAR FMSTPPPDDM FGFDDPFSPS DSREVVDLTK EYSFLHDSLV DYGNVNVHQV VPIITQSSID 101: ARAIADAVSG VDDVFGRKSQ KFLRQFREKL SESLVIEVLR LIARPSAVIS FFVWAGRQIG YKHTAPVYNA LVDLIVRDDD EKVPEEFLQQ IRDDDKEVFG 201: EFLNVLVRKH CRNGSFSIAL EELGRLKDFR FRPSRSTYNC LIQAFLKADR LDSASLIHRE MSLANLRMDG FTLRCFAYSL CKVGKWREAL TLVETENFVP 301: DTVFYTKLIS GLCEASLFEE AMDFLNRMRA TSCLPNVVTY STLLCGCLNK KQLGRCKRVL NMMMMEGCYP SPKIFNSLVH AYCTSGDHSY AYKLLKKMVK 401: CGHMPGYVVY NILIGSICGD KDSLNCDLLD LAEKAYSEML AAGVVLNKIN VSSFTRCLCS AGKYEKAFSV IREMIGQGFI PDTSTYSKVL NYLCNASKME 501: LAFLLFEEMK RGGLVADVYT YTIMVDSFCK AGLIEQARKW FNEMREVGCT PNVVTYTALI HAYLKAKKVS YANELFETML SEGCLPNIVT YSALIDGHCK 601: AGQVEKACQI FERMCGSKDV PDVDMYFKQY DDNSERPNVV TYGALLDGFC KSHRVEEARK LLDAMSMEGC EPNQIVYDAL IDGLCKVGKL DEAQEVKTEM 701: SEHGFPATLY TYSSLIDRYF KVKRQDLASK VLSKMLENSC APNVVIYTEM IDGLCKVGKT DEAYKLMQMM EEKGCQPNVV TYTAMIDGFG MIGKIETCLE 801: LLERMGSKGV APNYVTYRVL IDHCCKNGAL DVAHNLLEEM KQTHWPTHTA GYRKVIEGFN KEFIESLGLL DEIGQDDTAP FLSVYRLLID NLIKAQRLEM 901: ALRLLEEVAT FSATLVDYSS TYNSLIESLC LANKVETAFQ LFSEMTKKGV IPEMQSFCSL IKGLFRNSKI SEALLLLDFI SHMEIQWIEE KKTSDGT |
||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)