AT5G65820.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.629 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G49730.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:26339876..26341789 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 74124.70 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.33 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.29 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 637 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLPFTREMHR FSPIVEFLLS KRQIFLHYSQ FKSRFDLIHR SFHVSRALED NFRRSNGIGL VCLEKSHNDR TKNSKYDEFA SDVEKSYRIL RKFHSRVPKL 101: ELALNESGVE LRPGLIERVL NRCGDAGNLG YRFFVWAAKQ PRYCHSIEVY KSMVKILSKM RQFGAVWGLI EEMRKENPQL IEPELFVVLV QRFASADMVK 201: KAIEVLDEMP KFGFEPDEYV FGCLLDALCK HGSVKDAAKL FEDMRMRFPV NLRYFTSLLY GWCRVGKMME AKYVLVQMNE AGFEPDIVDY TNLLSGYANA 301: GKMADAYDLL RDMRRRGFEP NANCYTVLIQ ALCKVDRMEE AMKVFVEMER YECEADVVTY TALVSGFCKW GKIDKCYIVL DDMIKKGLMP SELTYMHIMV 401: AHEKKESFEE CLELMEKMRQ IEYHPDIGIY NVVIRLACKL GEVKEAVRLW NEMEENGLSP GVDTFVIMIN GLASQGCLLE ASDHFKEMVT RGLFSVSQYG 501: TLKLLLNTVL KDKKLEMAKD VWSCITSKGA CELNVLSWTI WIHALFSKGY EKEACSYCIE MIEMDFMPQP DTFAKLMKGL KKLYNREFAG EITEKVRNMA 601: AEREMSFKMY KRRGVQDLTE KAKSKQDREG KKKQRSR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)