AT1G74580.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:peroxisome 0.878 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G64320.1); Has 62554 Blast hits to 14470 proteins in 307 species: Archae - 5; Bacteria - 62; Metazoa - 860; Fungi - 1230; Plants - 58100; Viruses - 0; Other Eukaryotes - 2297 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:28020777..28023068 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 85775.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.74 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.05 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 763 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGPPLLPKHV TAVIKCQKDP MKALEMFNSM RKEVGFKHTL STYRSVIEKL GYYGKFEAME EVLVDMRENV GNHMLEGVYV GAMKNYGRKG KVQEAVNVFE 101: RMDFYDCEPT VFSYNAIMSV LVDSGYFDQA HKVYMRMRDR GITPDVYSFT IRMKSFCKTS RPHAALRLLN NMSSQGCEMN VVAYCTVVGG FYEENFKAEG 201: YELFGKMLAS GVSLCLSTFN KLLRVLCKKG DVKECEKLLD KVIKRGVLPN LFTYNLFIQG LCQRGELDGA VRMVGCLIEQ GPKPDVITYN NLIYGLCKNS 301: KFQEAEVYLG KMVNEGLEPD SYTYNTLIAG YCKGGMVQLA ERIVGDAVFN GFVPDQFTYR SLIDGLCHEG ETNRALALFN EALGKGIKPN VILYNTLIKG 401: LSNQGMILEA AQLANEMSEK GLIPEVQTFN ILVNGLCKMG CVSDADGLVK VMISKGYFPD IFTFNILIHG YSTQLKMENA LEILDVMLDN GVDPDVYTYN 501: SLLNGLCKTS KFEDVMETYK TMVEKGCAPN LFTFNILLES LCRYRKLDEA LGLLEEMKNK SVNPDAVTFG TLIDGFCKNG DLDGAYTLFR KMEEAYKVSS 601: STPTYNIIIH AFTEKLNVTM AEKLFQEMVD RCLGPDGYTY RLMVDGFCKT GNVNLGYKFL LEMMENGFIP SLTTLGRVIN CLCVEDRVYE AAGIIHRMVQ 701: KGLVPEAVNT ICDVDKKEVA APKLVLEDLL KKSCITYYAY ELLFDGLRDK RLRKKKGFTV VAI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)