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AT3G08840.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 0.920
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : D-alanine--D-alanine ligase family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
D-alanine--D-alanine ligase family; FUNCTIONS IN: D-alanine-D-alanine ligase activity, catalytic activity, ATP binding; INVOLVED IN: peptidoglycan biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PreATP-grasp-like fold (InterPro:IPR016185), ATP-grasp fold (InterPro:IPR011761), ATP-grasp fold, subdomain 2 (InterPro:IPR013816), D-alanine--D-alanine ligase, N-terminal (InterPro:IPR011127), D-alanine--D-alanine ligase, C-terminal (InterPro:IPR011095), Pre-ATP-grasp fold (InterPro:IPR013817); Has 8394 Blast hits to 8341 proteins in 2507 species: Archae - 8; Bacteria - 6597; Metazoa - 3; Fungi - 8; Plants - 65; Viruses - 0; Other Eukaryotes - 1713 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-2181-MONOMEReggNOG:COG1181eggNOG:ENOG410IFJMEMBL:AK118344
EMBL:BT005585EMBL:CP002686EnsemblPlants:AT3G08840EnsemblPlants:AT3G08840.1
entrez:820031ExpressionAtlas:Q8GXA2Gene3D:3.30.1490.20Gene3D:3.30.470.20
Gene3D:3.40.50.20GeneID:820031GO:GO:0005524GO:GO:0008716
GO:GO:0046872Gramene:AT3G08840.1gramene_plant_reactome:1119436gramene_plant_reactome:6876231
hmmpanther:PTHR23132hmmpanther:PTHR23132:SF0InterPro:IPR011095InterPro:IPR011127
InterPro:IPR011761InterPro:IPR013815InterPro:IPR013816InterPro:IPR016185
KEGG:00473+6.3.2.4KEGG:00550+6.3.2.4KEGG:ath:AT3G08840Pfam:PF01820
Pfam:PF07478Pfscan:PS50975PhylomeDB:Q8GXA2PROSITE:PS50975
Proteomes:UP000006548RefSeq:NP_566334.1SMR:Q8GXA2STRING:3702.AT3G08840.2
SUPFAM:SSF52440SUPFAM:SSF56059TAIR:AT3G08840UniGene:At.40214
unipathway:UPA00219UniProt:Q8GXA2
Coordinates (TAIR10) chr3:-:2682611..2686157
Molecular Weight (calculated) 56812.60 Da
IEP (calculated) 5.46
GRAVY (calculated) -0.05
Length 519 amino acids
Sequence (TAIR10)
(BLAST)
001: MASMATGVSF SMTSGIGEGG YDVHRVATAA RTTLKLNQKN SLSESTCMLL GMNKYRGSGA IRTVSKAVGY GQEMSKSLRV GLICGGPSAE RGISLNSARS
101: VLDHIQGDGI NVSCYYIDPD LKAFAISSAQ VYSNTPSDFD FKLESLAQGF SSLSELAEHL VSAVDIVFPV IHGRFGEDGG IQELLESHNI PFVGTGSREC
201: FRAFDKYEAS LELKELGFMT VPNYLVQGTG VDKSEIALWF TDNQLDLEMG KVVVKPAKAG SSIGVKVAFG VNDSIKKATE LILEGIDDRV VVEVFIEDAY
301: EFTAIVLDVG SGSVCHPVVL MPTEVQLQFH GIGDPKENAI FDYRRKYLPT QQVTYHTPPR FPIHVIKSIR EEASLIFQKL GLRDFARIDG WYLAPNSNLS
401: SPVSETLGGT KSGDIIFTDI NLISGMEQTS FLFQQASKVG FSHSNILRTI VHRACSRFPH LDWYNYGYSQ LLQGSTTLEV SEDPQKVFVI FGGDTSERQV
501: SVMSGTNVWV NLQRYVDVS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)