AT3G08840.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plastid 0.920 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : D-alanine--D-alanine ligase family | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
D-alanine--D-alanine ligase family; FUNCTIONS IN: D-alanine-D-alanine ligase activity, catalytic activity, ATP binding; INVOLVED IN: peptidoglycan biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PreATP-grasp-like fold (InterPro:IPR016185), ATP-grasp fold (InterPro:IPR011761), ATP-grasp fold, subdomain 2 (InterPro:IPR013816), D-alanine--D-alanine ligase, N-terminal (InterPro:IPR011127), D-alanine--D-alanine ligase, C-terminal (InterPro:IPR011095), Pre-ATP-grasp fold (InterPro:IPR013817); Has 8394 Blast hits to 8341 proteins in 2507 species: Archae - 8; Bacteria - 6597; Metazoa - 3; Fungi - 8; Plants - 65; Viruses - 0; Other Eukaryotes - 1713 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr3:-:2682611..2686157 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 56812.60 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 5.46 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.05 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 519 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MASMATGVSF SMTSGIGEGG YDVHRVATAA RTTLKLNQKN SLSESTCMLL GMNKYRGSGA IRTVSKAVGY GQEMSKSLRV GLICGGPSAE RGISLNSARS 101: VLDHIQGDGI NVSCYYIDPD LKAFAISSAQ VYSNTPSDFD FKLESLAQGF SSLSELAEHL VSAVDIVFPV IHGRFGEDGG IQELLESHNI PFVGTGSREC 201: FRAFDKYEAS LELKELGFMT VPNYLVQGTG VDKSEIALWF TDNQLDLEMG KVVVKPAKAG SSIGVKVAFG VNDSIKKATE LILEGIDDRV VVEVFIEDAY 301: EFTAIVLDVG SGSVCHPVVL MPTEVQLQFH GIGDPKENAI FDYRRKYLPT QQVTYHTPPR FPIHVIKSIR EEASLIFQKL GLRDFARIDG WYLAPNSNLS 401: SPVSETLGGT KSGDIIFTDI NLISGMEQTS FLFQQASKVG FSHSNILRTI VHRACSRFPH LDWYNYGYSQ LLQGSTTLEV SEDPQKVFVI FGGDTSERQV 501: SVMSGTNVWV NLQRYVDVS |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)