AT3G16890.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 ASURE: mitochondrion What is SUBAcon? |
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| Experimental Localisations and PPI |
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| FP Images |
Arabidopsis cell culture (mitochondrial marker)
Arabidopsis cell culture (plastidal marker)
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : pentatricopeptide (PPR) domain protein 40 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a mitochondrial pentatricopeptide repeat (PPR) domain protein, PPR40, which provides a signalling link between mitochondrial electron transport and regulation of stress and hormonal responses. Mutations in PPR40 result in enhanced sensitivity to salt, ABA and oxidative stress, as well as reduced electron transport through Complex III (cytochrome c reductase). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
pentatricopeptide (PPR) domain protein 40 (PPR40); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G39710.1); Has 55842 Blast hits to 14078 proteins in 304 species: Archae - 4; Bacteria - 51; Metazoa - 561; Fungi - 1019; Plants - 52283; Viruses - 0; Other Eukaryotes - 1924 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:5768401..5770380 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 74262.30 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.24 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.14 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 659 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRGFASSASR IATAAAASKS LNASTSVNPK LSKTLNSSGK PTNPLNQRYI SQVIERKDWF LILNQEFTTH RIGLNTRFVI SVLQNQDNPL HSLRFYLWVS 101: NFDPVYAKDQ SLKSVLGNAL FRKGPLLLSM ELLKEIRDSG YRISDELMCV LIGSWGRLGL AKYCNDVFAQ ISFLGMKPST RLYNAVIDAL VKSNSLDLAY 201: LKFQQMRSDG CKPDRFTYNI LIHGVCKKGV VDEAIRLVKQ MEQEGNRPNV FTYTILIDGF LIAGRVDEAL KQLEMMRVRK LNPNEATIRT FVHGIFRCLP 301: PCKAFEVLVG FMEKDSNLQR VGYDAVLYCL SNNSMAKETG QFLRKIGERG YIPDSSTFNA AMSCLLKGHD LVETCRIFDG FVSRGVKPGF NGYLVLVQAL 401: LNAQRFSEGD RYLKQMGVDG LLSSVYSYNA VIDCLCKARR IENAAMFLTE MQDRGISPNL VTFNTFLSGY SVRGDVKKVH GVLEKLLVHG FKPDVITFSL 501: IINCLCRAKE IKDAFDCFKE MLEWGIEPNE ITYNILIRSC CSTGDTDRSV KLFAKMKENG LSPDLYAYNA TIQSFCKMRK VKKAEELLKT MLRIGLKPDN 601: FTYSTLIKAL SESGRESEAR EMFSSIERHG CVPDSYTKRL VEELDLRKSG LSRETVSAS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)