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AT3G16890.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:30783145 (2019): extracellular region plant-type cell wall
FP Images

Arabidopsis cell culture (mitochondrial marker)

At3g16890-GFP
(full-length)
mitochondrial marker-RFPoverlay

Images by Sandra Tanz

Arabidopsis cell culture (plastidal marker)

At3g16890-GFP
(full-length)
plastidal marker-RFPoverlay

Images by Sandra Tanz
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : pentatricopeptide (PPR) domain protein 40
Curator
Summary (TAIR10)
Encodes a mitochondrial pentatricopeptide repeat (PPR) domain protein, PPR40, which provides a signalling link between mitochondrial electron transport and regulation of stress and hormonal responses. Mutations in PPR40 result in enhanced sensitivity to salt, ABA and oxidative stress, as well as reduced electron transport through Complex III (cytochrome c reductase).
Computational
Description (TAIR10)
pentatricopeptide (PPR) domain protein 40 (PPR40); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G39710.1); Has 55842 Blast hits to 14078 proteins in 304 species: Archae - 4; Bacteria - 51; Metazoa - 561; Fungi - 1019; Plants - 52283; Viruses - 0; Other Eukaryotes - 1924 (source: NCBI BLink).
Protein Annotations
BioGrid:6277eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AB026636
EMBL:CP002686EnsemblPlants:AT3G16890EnsemblPlants:AT3G16890.1entrez:820944
Gene3D:1.25.40.10GeneID:820944Genevisible:Q9LSQ2GO:GO:0005739
GO:GO:0006979GO:GO:0009651GO:GO:0009737GO:GO:0042775
Gramene:AT3G16890.1hmmpanther:PTHR24015hmmpanther:PTHR24015:SF760HOGENOM:HOG000244117
InParanoid:Q9LSQ2InterPro:IPR002885InterPro:IPR011990KEGG:ath:AT3G16890
OMA:EPLLCVRPaxDb:Q9LSQ2Pfam:PF01535Pfam:PF13041
Pfam:PF13812Pfam:Q9LSQ2Pfscan:PS51375PhylomeDB:Q9LSQ2
PRIDE:Q9LSQ2PRO:PR:Q9LSQ2PROSITE:PS51375ProteinModelPortal:Q9LSQ2
Proteomes:UP000006548RefSeq:NP_188314.1SMR:Q9LSQ2STRING:3702.AT3G16890.1
SUPFAM:SSF81901TAIR:AT3G16890tair10-symbols:PPR40TIGRfam:TIGR00756
TIGRFAMs:TIGR00756UniGene:At.65096UniProt:Q9LSQ2
Coordinates (TAIR10) chr3:-:5768401..5770380
Molecular Weight (calculated) 74262.30 Da
IEP (calculated) 9.24
GRAVY (calculated) -0.14
Length 659 amino acids
Sequence (TAIR10)
(BLAST)
001: MRGFASSASR IATAAAASKS LNASTSVNPK LSKTLNSSGK PTNPLNQRYI SQVIERKDWF LILNQEFTTH RIGLNTRFVI SVLQNQDNPL HSLRFYLWVS
101: NFDPVYAKDQ SLKSVLGNAL FRKGPLLLSM ELLKEIRDSG YRISDELMCV LIGSWGRLGL AKYCNDVFAQ ISFLGMKPST RLYNAVIDAL VKSNSLDLAY
201: LKFQQMRSDG CKPDRFTYNI LIHGVCKKGV VDEAIRLVKQ MEQEGNRPNV FTYTILIDGF LIAGRVDEAL KQLEMMRVRK LNPNEATIRT FVHGIFRCLP
301: PCKAFEVLVG FMEKDSNLQR VGYDAVLYCL SNNSMAKETG QFLRKIGERG YIPDSSTFNA AMSCLLKGHD LVETCRIFDG FVSRGVKPGF NGYLVLVQAL
401: LNAQRFSEGD RYLKQMGVDG LLSSVYSYNA VIDCLCKARR IENAAMFLTE MQDRGISPNL VTFNTFLSGY SVRGDVKKVH GVLEKLLVHG FKPDVITFSL
501: IINCLCRAKE IKDAFDCFKE MLEWGIEPNE ITYNILIRSC CSTGDTDRSV KLFAKMKENG LSPDLYAYNA TIQSFCKMRK VKKAEELLKT MLRIGLKPDN
601: FTYSTLIKAL SESGRESEAR EMFSSIERHG CVPDSYTKRL VEELDLRKSG LSRETVSAS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)