AT4G19650.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Mitochondrial transcription termination factor family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Mitochondrial transcription termination factor family protein; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: mitochondrial transcription termination factor-related / mTERF-related (TAIR:AT5G45113.1); Has 236 Blast hits to 231 proteins in 19 species: Archae - 0; Bacteria - 2; Metazoa - 5; Fungi - 0; Plants - 229; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:10691674..10695166 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 66749.10 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.69 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.22 | ||||||||||||||||||||||||||||||||
| Length | 575 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKKEKDVTET IMREEKKGSF FRDFEKLSKV AMLLSRNQRR VHKLLNMISN LNYCITFSSI PRQNPVQRLK AVFVRINLSY NNTRLTYQLE HISKNSPCFM 101: STLLSKIDDN QKDVSKGLTK FLRYNPINEF EPFFESLGLC PYEFETFLPR KLMFLSDDGI MFENFHALCN YGIPRGKIGR MYKEAREIFR YESGMLAMKL 201: RGYENLGLSK ATVIKLVTSC PLLLVGGIDA EFSSVVDKLK GLQVGCDWLG RYLSDRKTYS WRRILETIEF LDKVGCKEEK LSSLLKTYPA LVIEGSGKKF 301: YVLFGRLFKA GLQVNEIYRL FIDNPEMLSD KCVKNIQKTL DFLIAIRMET QFITKILLSH MELIGSCSLP APRTACLSLN VKQDELCKIL KKEPLRLFCF 401: VSTTKKRKSK PLSEDSRKYL EKTEFLLRLG YVENSDEMVK ALKQFRGRGD QLQERFDCLV KAGLNYNVVT EIIRHAPMIL NLSKDVIEKK IHSLTELLGY 501: PIESLVRFPA YLCYDMQRIH HRFSMYLWLR ERDAAKPMLS PSTILTCGDA RFVKYFVNVH PEGPAIWESI NQSST |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)