AT5G06810.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Mitochondrial transcription termination factor family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Mitochondrial transcription termination factor family protein; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT4G19650.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:2108493..2112256 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 131213.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.67 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.19 | ||||||||||||||||||||||||||||||||
| Length | 1141 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MKLRQNPSRF TSVLKWVSQL SLETQLKPSI SGTGFLLRCA QTPRSFATVT GNEVCSEKSK VKRTRNGFKI TPNVRKLAEE AMLDYFYSTR GLQYMVAESM 0101: SKNSPIFIDN LLKKVDCVTA SDINQSITRY LRFHPVNEFE PFLESSGLNP SEYNHLVPCD KVFLDEEGFL LENHHVLCYS GVDPKRIGKI FKEAREVFSY 0201: ETGVLASKIK AYEDLGFSRL FLSKLIVCSP RVLMGHTNIE LVQVVKTLQS LGFEFEWVME NLSDEGPDWS SVHRVLSLLR EICFDEEKLY GLIRNCPSLL 0301: FENSGKWTGI LVGFETKLGA SRSELCSLFQ KFPLIQVEKC VSNLRQCFLF LKEIEMEDDE IHKVFRSHSW WLGSCKLKKT SSLLVFLKAG KTRVCQVIQE 0401: NPEEMKKWTM GSKIQPLPAT NVDIESKSMK TQFLLDLGYK ENSEEMETAM KNFRGKGSEL RERFNVLVSL GFTKKDVKDM VKACPTMLSQ TCDILESKVN 0501: YLIKELGYPL STLVDFPSCL KFTLQRMKLR FAMFSWLQAR GKVDRKIKVS TMLACSDKIF VMSFMRNPRF KSLLLNWVSQ AFAETPLKPQ LSRNPRFFAT 0601: QRALVDAEVS GEKWGLRTRN EIRKVAQVAM FDYFYQTRGL QFLVAESMSK NAPVFNDNLL KKLNGCDVDV DDDDDIVKAI TRFLWFHPVN EFEPFLESLG 0701: LKPSEFSHLI PCDKMFLNED AFLLENYHVF WNYGIGREKM GKIFKEAREV FGYETGVLAS KIKSYEDLGF SKLFLSKLIV CSPSILIGDM NVGLAKVMEM 0801: LKAIGFGVDW VTENLSEEVS YDWSSMHRCL SFLRDLYVDE NELCELIRKM PRLIFEDSGE WTLILAGFEA KLGSSRSELS SLFQKFPQCQ SLGKFVLNLR 0901: HCFLFLKDIE MDDDEIGKIF RLHSLWIGVS RLKQTSTLLI NLKGGKGRLC QVIQENPEEM KKWIMGLRVQ PLPATGYKVN TKSKTMKTQF LLDLGYKENS 1001: EEMERALKNF RGKGSELRER FNVLVSFGLT EKDVKDMVKA CPSILTQACD ILESKVNYLV KELGYPLSTL VTFPTCLKYT LQRMKLRFSM FSWLQDRGKA 1101: DPKLQVSTIL VCSDKFFATR FVNRHPDGPK HLEDLKKLLV C |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)