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AT1G31220.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:24124904 (2013): plastid
  • PMID:22550958 (2012): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18431481 (2008): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Formyl transferase
Curator
Summary (TAIR10)
N10-formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase that catalyzes the conversion of phosphoribosyl glycineamide to phosphoribosyl N-formylglycineamide
Computational
Description (TAIR10)
Formyl transferase; FUNCTIONS IN: hydroxymethyl-, formyl- and related transferase activity, phosphoribosylglycinamide formyltransferase activity, formyltetrahydrofolate deformylase activity; INVOLVED IN: purine ribonucleotide biosynthetic process, biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoribosylglycinamide formyltransferase, active site (InterPro:IPR001555), Phosphoribosylglycinamide formyltransferase (InterPro:IPR004607), Formyl transferase, N-terminal (InterPro:IPR002376); BEST Arabidopsis thaliana protein match is: Formyl transferase (TAIR:AT4G17360.1); Has 13846 Blast hits to 13846 proteins in 2648 species: Archae - 117; Bacteria - 9929; Metazoa - 318; Fungi - 202; Plants - 129; Viruses - 3; Other Eukaryotes - 3148 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G31220-MONOMEREC:2.1.2.2eggNOG:COG0299eggNOG:KOG3076
EMBL:AC004793EMBL:BT003877EMBL:BT006080EMBL:CP002684
EMBL:X74767EnsemblPlants:AT1G31220EnsemblPlants:AT1G31220.1entrez:840010
Gene3D:3.40.50.170GeneID:840010Genevisible:P52422GO:GO:0004644
GO:GO:0006189GO:GO:0009507Gramene:AT1G31220.1gramene_pathway:2.1.2.2
gramene_pathway:PWY-6121gramene_plant_reactome:1119265gramene_plant_reactome:6876673HAMAP:MF_01930
hmmpanther:PTHR10520hmmpanther:PTHR10520:SF9HOGENOM:HOG000033575InParanoid:P52422
InterPro:IPR001555InterPro:IPR002376InterPro:IPR004607KEGG:00230+2.1.2.2
KEGG:00670+2.1.2.2KEGG:00670+2.1.2.9KEGG:00970+2.1.2.9KEGG:ath:AT1G31220
KO:K00601OMA:EYDTGRIPaxDb:P52422Pfam:P52422
Pfam:PF00551PhylomeDB:P52422PIR:D86438PIR:S37105
PRIDE:P52422PRO:PR:P52422PROSITE:PS00373ProteinModelPortal:P52422
Proteomes:UP000006548RefSeq:NP_174407.1scanprosite:PS00373SMR:P52422
STRING:3702.AT1G31220.1SUPFAM:SSF53328TAIR:AT1G31220TIGRfam:TIGR00639
TIGRFAMs:TIGR00639UniGene:At.48251UniGene:At.71214UniPathway:UPA00074
UniProt:P52422
Coordinates (TAIR10) chr1:+:11157064..11158408
Molecular Weight (calculated) 32171.70 Da
IEP (calculated) 9.07
GRAVY (calculated) -0.19
Length 292 amino acids
Sequence (TAIR10)
(BLAST)
001: MESRVLFSSQ FNFPVNSPFK TRETSIAPLT PSRNVLSFSF RSPAERCAMR IVPLVKAASS TPQIVAEVDG SSHEPRRKKL AVFVSGGGSN FRKIHEGCSD
101: GSVNGDVVLL VTNKKDCGGA EYARSNGIPV LVFPKAKREP SDGLSPSELV DVLRKYGVDF VLLAGYLKLI PVELVQAFPK RILNIHPALL PAFGGKGLYG
201: IKVHKAVLES GARYSGPTIH FVNEEYDTGR ILAQSAVRVI ANDTPEELAK RVLHEEHKLY VEVVGAICEE RIKWREDGVP LIQNKQNPDE YY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)