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AT3G04480.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.988
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : endoribonucleases
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
endoribonucleases; FUNCTIONS IN: endoribonuclease activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF71, ATP-binding domain (InterPro:IPR002761), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Endoribonuclease L-PSP (InterPro:IPR006175), Endoribonuclease L-PSP/chorismate mutase-like (InterPro:IPR013813); Has 2752 Blast hits to 2664 proteins in 980 species: Archae - 283; Bacteria - 1591; Metazoa - 282; Fungi - 177; Plants - 40; Viruses - 0; Other Eukaryotes - 379 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0251eggNOG:COG2102eggNOG:KOG2316eggNOG:KOG2317
EMBL:CP002686EnsemblPlants:AT3G04480EnsemblPlants:AT3G04480.1entrez:819604
Gene3D:3.30.1330.40Gene3D:3.40.50.620GeneID:819604Gramene:AT3G04480.1
hmmpanther:PTHR12196InParanoid:F4J3Q1InterPro:IPR002761InterPro:IPR006175
InterPro:IPR013813InterPro:IPR014729InterPro:IPR030662iPTMnet:F4J3Q1
KEGG:ath:AT3G04480KO:K06927OMA:AMMRCLDPANTHER:PTHR12196
PaxDb:F4J3Q1Pfam:PF01042Pfam:PF01902PRIDE:F4J3Q1
ProteinModelPortal:F4J3Q1Proteomes:UP000006548Reactome:R-ATH-5358493RefSeq:NP_187098.2
SMR:F4J3Q1STRING:3702.AT3G04480.1SUPFAM:SSF52402SUPFAM:SSF55298
TAIR:AT3G04480TIGRfam:TIGR00290TIGRFAMs:TIGR00290UniGene:At.18853
unipathway:UPA00559UniProt:F4J3Q1
Coordinates (TAIR10) chr3:-:1193988..1197320
Molecular Weight (calculated) 79903.50 Da
IEP (calculated) 4.93
GRAVY (calculated) -0.11
Length 718 amino acids
Sequence (TAIR10)
(BLAST)
001: MKVVALVSGG KDSCYAMMKC IQYGHEIVAL ANLLPVDDSV DELDSYMYQT VGHQILVGYA ECMNVPLFRR RIRGSSRHQK LSYQMTPDDE VEDMFVLLSE
101: VKRQIPSITA VSSGAIASDY QRLRVESICS RLGLVSLAFL WKQDQTLLLQ DMIANGIKAI LVKVAAIGLD PSKHLGKDLA FMEPYLLKLK EKYGSNVCGE
201: GGEYETLTLD CPLFTNASIV LDEYQVVLHS PDSIAPVGVL HPSTFHLEKK GNPDSHSPEE ESSLVSEVLG DGPNTSDSTR QRDNGIVDLV EHTSNRLHIS
301: RAEKHNTFSI CCWLEDSSES SKGLKEDLET VLTELESQLL KHGYNWQHVL YIHLYISDMS EFAVANETYV KFITQEKCPF GVPSRSTIEL PLVQAGLGKA
401: YIEVLVANDE SKRVLHVQSI SCWAPSCIGP YSQATLHQSV LHMAGQLGLD PPTMNLQTEG AIAELNQALT NSEAIAESFN CSISSSAILF VVFCSARTKQ
501: SERNQLHEKF VTFLGLAKSS RRVQNVLDPM FLYILVPDLP KRALVEVKPI LYVEEDTDTE DETSRDQSGE GHYSIWGYKP EKWHQDCVQK RVVDGKVCVA
601: VLSISAELMR KLQGEEEELE IVSRFCVYLL NKTLSENSFS WQDTTSLRIH FSTSIGVSVE RLSAIFVSAF RELNEMSDGV KMDSLKEPIF NLVPVLGAGN
701: SSASLDNIIT CELFALRS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)