AT1G52780.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF2921) | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function (DUF2921); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: cultured cell, callus, leaf; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2921 (InterPro:IPR021319); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF2921) (TAIR:AT4G21700.1); Has 114 Blast hits to 99 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 114; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:19658846..19662025 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 119965.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.35 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.15 | ||||||||||||||||||||||||||||||||
| Length | 1059 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MKTVINLLPL LFLSFGFLFS SLVIASFSEM EPVPMFESIG EHRDESAPKI SYDRINDVKK KCKSVLSSAS ELKLEDISRT PRKSKRNLGF RYGDWNQDSG 0101: DSPILPFDST NTLRNSSTKP MNLVSFSVTD LDLPHRTKKY IGVNGVLLLA ITMFSELPSL RSYGLREFEL WPSHTQLKIS FQGIYVENDD DERVLCMLGE 0201: TMLPSRDESD SSNPWKWVKE HDTPPLLQDD MILLLLRYPK SFTLTKRVIQ GELTSLNQKP SLKLFDKIHL FSQLGKSVRY DFVSNDLVSK ACDPYPYKND 0301: TFTSSGSGGI NVYKEKGFCD LLQRVTNRAP LTVVPNWKCH GTDEYCSKLG PFAFDKDIKS TDGSFKDVKL YMQNVHCEET AARSQSDAVT KVSAVFRAVH 0401: PNENLYISGM RSGIDNMTVT AEGIWKPSSG QLCMVGCRRG QVDGCNARIC LYIPTTFSIR QRSILVGTFS CLNTEKNLTP SFFPLSFEKL VEPMDMQNYF 0501: HSSASHPFYS YSKLDDAGAI LERNEEFSFG TIIKKSVMHF PKLEDSDDLL SSLSLLAEDL TFHTPAFTEK RASGTNFGMD VLSLGPLFGL FWRTSNFSIA 0601: DQTTPYRTKA EYTEKQLLLN VSGQISLTGE NFGNFSVLYL EGLYDEHVGK MYLVGCRDVR ASWKILFESP DLEAGLDCLI DVVVSYPPIK SRWLADPTAK 0701: VSISSNRPED DPLYFKPIKL KTTPIFYRRQ REDILSRAGV EGILRVLTLT FSIGCITSLL FYVSSNTDSL PFVSLVMLGV QALGYSLPLI TGAEALFKRK 0801: AASATTYETP SYDLQRSQWF NVIDYTVKLL VMVCFLLTLR LCQKVWKSRA RLLTRTPQEP HKVPSDRRVL LVVLILHALG YIVALIRHPA RADRLVGGSY 0901: GSNASNWWQT ETEEYIGLVQ DFFLLPQVIA NAMWQIDSRQ PLRKLYYFGI TLVRLFPHAY DYIVGSVPDP YFIGEEHEFV NPNFDFFSKF GDIAIPVTAI 1001: LLAVIVFVQQ RWDYDKLSQA LSFGRFRILP SRSVKYERVM SESEMVSGAR VNGNRGDEE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)