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AT5G39450.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.877
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : F-box family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G39460.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IKCSeggNOG:ENOG410XZZ4EMBL:AB009054EMBL:AY093164
EMBL:BT008911EMBL:CP002688EnsemblPlants:AT5G39450EnsemblPlants:AT5G39450.1
entrez:833941GeneID:833941Gramene:AT5G39450.1hmmpanther:PTHR31370
hmmpanther:PTHR31370:SF2HOGENOM:HOG000030617InParanoid:Q8RWD6IntAct:Q8RWD6
InterPro:IPR001810KEGG:ath:AT5G39450OMA:ANDEYAGPaxDb:Q8RWD6
Pfam:PF00646Pfam:Q8RWD6Pfscan:PS50181PhylomeDB:Q8RWD6
PRO:PR:Q8RWD6PROSITE:PS50181ProteinModelPortal:Q8RWD6Proteomes:UP000006548
RefSeq:NP_198761.2SMART:SM00256SUPFAM:SSF81383TAIR:AT5G39450
UniGene:At.30345UniProt:Q8RWD6
Coordinates (TAIR10) chr5:+:15786045..15787877
Molecular Weight (calculated) 65178.10 Da
IEP (calculated) 7.84
GRAVY (calculated) -0.15
Length 579 amino acids
Sequence (TAIR10)
(BLAST)
001: MNQMRNGDLG SESFGTCLLL SLPEDVIAVI ARFVSPRDIC NLSLCCKSLC DVVDSERIWL VQCEVVKVLP LSEIIQWRIG ISSYKALCWF LGEVMKPLVG
101: VWVHQNPELG NVVYVMPGFL SVVGCRIIPQ EVGPLGIEEA RVMWSPVFEI ICGFDGSAKF FLHGRDGKVQ CCLHPGFVRG IEKSCNVLLL EVETRREKKL
201: CNEIDETVLL VETGVQLPFR KLPFSYRRNL LHIVTSTVGI PVPDLSSEKL FPTSKDDEAV LLERRTMLLK MHKFGGDWNH MNLEDECTNI PNQVDINKSW
301: KHLGFEGDIR NMDAENQTQR KSFSRYFRSG IKHILGRSSS SKNMSSSRSE TRPLNLQKFL NFGDSIGLSL KASNIKLSSY QGWPNMDETR YALYKLPIKD
401: PIANDEYAGL WGGTFGWPPG KCTEDKPGKA FFLLMLSYEE SQDGTERLLI GTKILEGTHY GMHPNGSAMF VIKIDSPSFE GFPFDTNGED FEHSYAGEGT
501: AKGYGFRYPG YKPGTLFVTS KGLLMFIWKA TKAVLTLQRL NLGELLRKGV CVSPLPPCLN FAYLIKCHTN VFAPERRRS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)