AT4G12010.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.985 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Disease resistance protein (TIR-NBS-LRR class) family | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) (TAIR:AT4G19510.1); Has 31049 Blast hits to 21052 proteins in 960 species: Archae - 20; Bacteria - 2553; Metazoa - 5096; Fungi - 331; Plants - 21936; Viruses - 4; Other Eukaryotes - 1109 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:7197325..7201393 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 138423.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.97 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.22 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1219 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MESSSPSSAE FDVFLSFRGF DTRNNFTGHL QKALRLRGID SFIDDRLRRG DNLTALFDRI EKSKIAIIVF STNYANSAWC LRELVKILEC RNSNQQLVVP 0101: IFYKVDKSDV EKQRNSFAVP FKLPELTFPG VTPEEISSWK AALASASNIL GYVVKEISTS EAKLVDEIAV DTFKKLNDLA PSGNEGLVGI ESRLKNLEKL 0201: LSWEDLDTVH IIGIVGMVGI GKTTLADCLY GRMRGQFDGS CFLTNIRENS GRSGLESLLQ KLFSTVLNDR DLEIGAPGNA HERFERRLKS KRLLIVLDDV 0301: NDEKQIRYLM GHCKWYQGGS RIIITTRDSK LIETIKGRKY VLPKLNDREA LKLFSLNAFS NSFPLKEFEG LTNMVLDYAK GHPLALKVLG SDLCERDDLY 0401: WEAKLDRLKS RSHGDIYEVL ETSYEELTTE QKNVFLDIAC FFRSENVDYV TSLLNSHGVD VSGVVKDLVD KCLITLSDNR IEMHDMLQTM AKEISLKVET 0501: IGIRDCRWLS RHGNQCQWHI RLWDSEDICD LLTEGLGTDK IRGIFLDTSK LRAMRLSAKA FQGMYNLKYL KIYDSHCSRG CEAEFKLHLR RGLSFLPNEL 0601: TYLHWHGYPL QSIPLDFDPK NLVDLKLPHS QLEEIWDDEK DVGMLKWVDL SHSINLRQCL GLANAHNLER LNLEGCTSLK KLPSTINCLE KLIYLNLRDC 0701: TSLRSLPKGI KTQSLQTLIL SGCSSLKKFP LISENVEVLL LDGTVIKSLP ESIQTFRRLA LLNLKNCKKL KHLSSDLYKL KCLQELILSG CSQLEVFPEI 0801: KEDMESLEIL LMDDTSITEM PKMMHLSNIK TFSLCGTSSH VSVSMFFMPP TLGCSRLTDL YLSRCSLYKL PDNIGGLSSL QSLCLSGNNI ENLPESFNQL 0901: NNLKWFDLKF CKMLKSLPVL PQNLQYLDAH ECESLETLAN PLTPLTVGER IHSMFIFSNC YKLNQDAQAS LVGHARIKSQ LMANASAKRY YRGFVPEPLV 1001: GICYPATEIP SWFCHQRLGR SLEIPLPPHW CDINFVGLAL SVVVSFKDYE DSAKRFSVKC CGNFENKDSS FTRFDFTLAG WNEPCGSLSH ESRKLTSDHV 1101: FMGYNSCFLV KNVHGESNSC CYTKASFEFY VTDDETRKKI ETCEVIKCGM SLMYVPEDDD CMLLKKTNIV QLSLKSGPSC SYDLDDVMDD VRPKRGLCQF 1201: VGGEEPGCKR RKEEKITVR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)