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AT4G19990.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : FAR1-related sequence 1
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FAR1-related sequence 1 (FRS1); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to red or far red light; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: MULE transposase, conserved domain (InterPro:IPR018289), Transcription factor, FAR1-related (InterPro:IPR004330), Zinc finger, PMZ-type (InterPro:IPR006564), Zinc finger, SWIM-type (InterPro:IPR007527); BEST Arabidopsis thaliana protein match is: far-red elongated hypocotyls 3 (TAIR:AT3G22170.2); Has 1641 Blast hits to 1185 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 8; Plants - 1612; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JIW6eggNOG:ENOG410ZD4WEMBL:AL021637EMBL:AL161552
EMBL:AY763412EMBL:CP002687EnsemblPlants:AT4G19990EnsemblPlants:AT4G19990.1
entrez:827744ExpressionAtlas:Q5UBY2GeneID:827744Genevisible:Q5UBY2
GO:GO:0005634GO:GO:0006355GO:GO:0008270hmmpanther:PTHR31669
hmmpanther:PTHR31669:SF62HOGENOM:HOG000090708InParanoid:Q5UBY2IntAct:Q5UBY2
InterPro:IPR004330InterPro:IPR006564InterPro:IPR007527InterPro:IPR031052
iPTMnet:Q5UBY2ncoils:CoilPANTHER:PTHR31669PaxDb:Q5UBY2
Pfam:PF03101Pfam:PF04434Pfam:PF10551Pfam:Q5UBY2
Pfscan:PS50966PhylomeDB:Q5UBY2PIR:T04883PRIDE:Q5UBY2
PRO:PR:Q5UBY2PROSITE:PS50966ProteinModelPortal:Q5UBY2Proteomes:UP000006548
RefSeq:NP_193732.2SMART:SM00575STRING:3702.AT4G19990.2TAIR:AT4G19990
tair10-symbols:FRS1UniGene:At.47952UniProt:Q5UBY2
Coordinates (TAIR10) chr4:+:10832848..10835389
Molecular Weight (calculated) 80316.70 Da
IEP (calculated) 6.11
GRAVY (calculated) -0.77
Length 687 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSGECSNVQ LDDHRKNNLE IDEGREFESK EEAFEFYKEY ANSVGFTTII KASRRSRMTG KFIDAKFVCT RYGSKKEDID TGLGTDGFNI PQARKRGRIN
101: RSSSKTDCKA FLHVKRRQDG RWVVRSLVKE HNHEIFTGQA DSLRELSGRR KLEKLNGAIV KEVKSRKLED GDVERLLNFF TDMQVENPFF FYSIDLSEEQ
201: SLRNIFWVDA KAMHGCRPRV ILTKHDQMLK EAVLEVFPSS RHCFYMWDTL GQMPEKLGHV IRLEKKLVDE INDAIYGSCQ SEDFEKNWWE VVDRFHMRDN
301: VWLQSLYEDR EYWVPVYMKD VSLAGMCTAQ RSDSVNSGLD KYIQRKTTFK AFLEQYKKMI QERYEEEEKS EIETLYKQPG LKSPSPFGKQ MAEVYTREMF
401: KKFQVEVLGG VACHPKKESE EDGVNKRTFR VQDYEQNRSF VVVWNSESSE VVCSCRLFEL KGFLCRHAMI VLQMSGELSI PSQYVLKRWT KDAKSREVME
501: SDQTDVESTK AQRYKDLCLR SLKLSEEASL SEESYNAVVN VLNEALRKWE NKSNLIQNLE ESESVTAQDL PIHEEQNNTY DMNKDDNVAD TGQEYSLQEV
601: WKVTALQEQR NRYSILDDYL SAQHMSHEMG QINSMASNRN GYCSVHQNIH SLQGQSITHP RLYETEQSSF RPEAMYERLQ DMVKDLN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)