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AT3G03560.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:24030099 (2013): plasma membrane
  • PMID:21433285 (2011): plasma membrane
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23490.1); Has 157 Blast hits to 146 proteins in 38 species: Archae - 3; Bacteria - 14; Metazoa - 8; Fungi - 0; Plants - 120; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IH5QeggNOG:ENOG410Y91JEMBL:CP002686EnsemblPlants:AT3G03560
EnsemblPlants:AT3G03560.1entrez:821235GeneID:821235GO:GO:0005886
Gramene:AT3G03560.1hmmpanther:PTHR31149hmmpanther:PTHR31149:SF4InParanoid:F4J152
InterPro:IPR032015iPTMnet:F4J152KEGG:ath:AT3G03560ncoils:Coil
OMA:NDATRNNPaxDb:F4J152Pfam:PF16709PRIDE:F4J152
ProteinModelPortal:F4J152Proteomes:UP000006548RefSeq:NP_187006.2TAIR:AT3G03560
UniGene:At.44334UniProt:F4J152
Coordinates (TAIR10) chr3:-:853153..856486
Molecular Weight (calculated) 59125.50 Da
IEP (calculated) 4.85
GRAVY (calculated) -0.68
Length 521 amino acids
Sequence (TAIR10)
(BLAST)
001: MDDNRSSESI KRHEIEKDTI ASRKLEDTNT KLIQDPEEMA LYAKVRSQEE EIHSLQERIA AACLKDMQLL NEKYGLERKC ADLRVAIDEK QNESVTSALN
101: ELARRKGDLE ENLKLAHDLK VTEDERYIFM TSLLGLLAEY GVWPRVANAT AISSGIKHLH DQLQWKTKAC NDRIRELSSI VENQPGTDFI SKDNHDPRNS
201: KTQASYGSTD RGNDYQTNEQ LLPPMENVTR NPYHNIMQDT ESLRFNNQIG GGSQGIFPQP KRENFGYPLS SVAGKEMIQE REEKAENSSM FDAYNGNEEF
301: ASHVYEEGPG IDGFQIIGDA IPGEKVLGCG FPVRGTTLCM FQWVRHLEDG TRQYIEGATH PEYIVTADDV DKLIAVECIP MDDQGRQGEL VRLFANDQNK
401: IRCDTEMQTE IDTYISRGQA SFNVQLLMDS SESWEPATVV LKRSSYQIKT NTTEAVVISE KYSKELQIRV PSGESTQFVL ISYDGSSHPI STLNVRMRDT
501: LVLTMRMLQS KALDERRKGR V
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)