AT3G26600.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.832 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : armadillo repeat only 4 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Armadillo repeat protein. One of a family of four in Arabidopsis. Expressed in vegetative tissues, anthers and ovules. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
armadillo repeat only 4 (ARO4); FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: armadillo repeat only 2 (TAIR:AT5G66200.1); Has 868 Blast hits to 710 proteins in 130 species: Archae - 0; Bacteria - 0; Metazoa - 111; Fungi - 191; Plants - 457; Viruses - 0; Other Eukaryotes - 109 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:9769889..9771736 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 67810.40 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.91 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.05 | ||||||||||||||||||||||||||||||||||||||||
| Length | 615 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGEEESRIGD ELSILVLTAE RLRVAVDEAE SFKTECGEVG KQVDRLAQML RTLVRFVSSS SQQVYDRPIR RVIVDVKKNL ERGFALVRKC RRHNIIRRVC 101: TIINAADFRK VINLLESSNG DVKWILSVFD SDGDGSFGGG IVISLPPIAT NDPILPWVWS LVASIQMGKL VDKIDAANQL GSLAGDNDRN KKIIVDEGGV 201: SPLLRLLKES SSAEGQIAAA TALGLLACDE DKVRSIVNEL GVPIIVQVLG DSSVRVQIKV ATLVARMAEH DPVAQDEFAR QSVIKPLVTL LSLDVFVDDI 301: HLSKHNSIHS LVQMNKEVEK DPSSKLYRPL KSSKSNVYRD IGGSGSRTGN FKKERDNENP EVKHELKVNC AEALWMLARG NVANSRRITE TKGLLSLAKI 401: VEKEVGELQY NCLMTLMEIT AAAESSADLR RAAFKTNSPA AKAVIDQMLW IIKDVDSPIL KIPAIQSIGS LARTFPARET RMIKPLVEKL GSSNQEVAIT 501: AVISLQKFVC PENFLCAEHS KNIIEYGAIP LLMKLIRNVE QQMQLQCLAL LCYLSVNASN HQQLEQAKVL TVLEGAERLA GLQNMELREL VSKAIYQLSL 601: YNAGSHSQML SYVGP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)