AT4G36090.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.997 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : oxidoreductase, 2OG-Fe(II) oxygenase family protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
oxidoreductase, 2OG-Fe(II) oxygenase family protein; BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT2G17970.1); Has 178 Blast hits to 178 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 49; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:17079042..17080670 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 43124.90 Da | ||||||||||||||||||||||||
| IEP (calculated) | 4.70 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.45 | ||||||||||||||||||||||||
| Length | 385 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEPNYEEDVF LAKYQSSELK IASEFLTNWL PFLSRDLCND CAHVLSDRIR SLDPEHCSNG EVKAGSGSMV DNMESEEVDN MESEEVDNKM DNIYDGKLCV 101: SHSLDSLKAG AFVFGSLSDS VSHAMPSSQS TVSEAASAQM SWADMGEEDG LEEEDQKENE LGSHGVDVSP SVGDSMKTPE KRKLSREERE RYRFMNVKKM 201: KVFSCYEKVR GRSVNILEGL ELHTGVFSAV EQKKIVDFVY ELQEKGRRGE LRERTFTAPH KWMRGKGRVT IQFGCCYNYA PDKAGNPPGI LQRGDVDPMP 301: SIFKVIIKRL VGWHVLPPTC VPDSCIVNIY EEDDCIPPHI DNHDFLRPFC TVSFLSECNI LFGSNLKVLG PGEFSGSYSI PLPVG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)