AT5G23520.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : smr (Small MutS Related) domain-containing protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
smr (Small MutS Related) domain-containing protein; CONTAINS InterPro DOMAIN/s: Smr protein/MutS2 C-terminal (InterPro:IPR002625), Domain of unknown function DUF1771 (InterPro:IPR013899); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:7929591..7931296 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 49119.20 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.96 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.83 | ||||||||||||||||||||||||||||||||
| Length | 435 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSWMKGKSSG WTAFDLKQRQ KQGLESEVEG DPFPPVSTSV NASFGVRGRL RRNHEPSEKS FSSVLLPPSR FPALTENKDC GNQERGGCCR RKPDTLSLPV 101: NSHDLAFTKL KEMNSWADDN LIRDVLLSTE DDFEMALAFL KGMVSSGKED EEPTSKIEGY SSDNRRSEYR TFEKTVTSSV KMAARSTFED AGKYDLENSD 201: GSSFLVNASD NEKFPDDISE LDSIIQRLQS IPIEPEWEED DLYLSHRKDA LKVMRSASNH SRAAQNAFQR YDHASAKQHS DKAREDWLAA EKLNAEAAKK 301: IIGITNKDND IWKLDLHGLH ATEAVQALQE RLQMIEGHFT VNRSVSPNRG RSKNAALRSA SQEPFGRLDE EGMHCQRTSS RELRNSLQVI TGIGKHSRGQ 401: ASLPLAVKTF FEDNRYRFDE TRPGVITVRP KFRHS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)