AT3G05830.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|
||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||
| Description (TAIR10) | protein_coding : | ||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes alpha-helical IF (intermediate filament)-like protein. | ||||||||||||||||||||
| Computational Description (TAIR10) |
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26770.1); Has 58119 Blast hits to 29878 proteins in 2086 species: Archae - 743; Bacteria - 6396; Metazoa - 31988; Fungi - 4358; Plants - 2396; Viruses - 181; Other Eukaryotes - 12057 (source: NCBI BLink). | ||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||
| Coordinates (TAIR10) | chr3:+:1736796..1738565 | ||||||||||||||||||||
| Molecular Weight (calculated) | 39580.70 Da | ||||||||||||||||||||
| IEP (calculated) | 9.40 | ||||||||||||||||||||
| GRAVY (calculated) | -0.97 | ||||||||||||||||||||
| Length | 336 amino acids | ||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSYSEKTTVD PLLRDLDEKK ESFRRNVVSL ATELKQVRGR LVSQEQSFLK ETITRKEAEK RGKNMEMEIC KLQKRLEERN CQLEASASAA DKFIKELEEF 101: RLKLDTTKQT AEASADSAQS TKIQCSMLKQ QLDDKTRSLR EQEDRMTQLG HQLDDLQRGL SLRECSEKQL REEVRRIERE VTEAIAKAGI GGMDSELQKL 201: LEDVSPMKFE RMNRLVEVKD EEITKLKDEI RLMSGQWKHK TKELESQLEK QRRTDQDLKK KVLKLEFCLQ EARSQTRKLQ RKGERRDMEI KEIRDLISEK 301: QNLNNESWDK QKFWDNSGFK IVVSMSMLML VVVSKR |
||||||||||||||||||||
| See Also |
|
||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)