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AT5G13340.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10890.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JEHYeggNOG:ENOG41119IKEMBL:AL163491EMBL:CP002688
EnsemblPlants:AT5G13340EnsemblPlants:AT5G13340.1entrez:831175GeneID:831175
Gramene:AT5G13340.1hmmpanther:PTHR31711hmmpanther:PTHR31711:SF2HOGENOM:HOG000030700
InterPro:IPR033371KEGG:ath:AT5G13340KO:K13173ncoils:Coil
OMA:EEEHANQPANTHER:PTHR31711Pfam:PF15346PhylomeDB:Q9LYU2
PIR:T48581Proteomes:UP000006548RefSeq:NP_196838.1TAIR:AT5G13340
UniGene:At.54834UniProt:Q9LYU2
Coordinates (TAIR10) chr5:-:4277939..4279397
Molecular Weight (calculated) 29429.50 Da
IEP (calculated) 10.66
GRAVY (calculated) -1.80
Length 242 amino acids
Sequence (TAIR10)
(BLAST)
001: MARNDSRSRS PSHRRRYSRS PVTHRSSRRT RRDRSRSPYT SRHKKSRSPA PRQHQRDRSS SLSPSEHRIA IEVKKEQEDK ARLQHEAELK RLEEETAQRI
101: EEAVRKNVEE RMKTEEVKEE IERRTKEAYE KMFLDVEIQL KKEKEAALNE ARRKEEQARR EREELDKMLE ENSRRVEESQ RREAMELQRK EEERYRELEL
201: LQRQKEEAAR RKKLEEEEEI RNSSKLSNGN RSRSKLHFGM GL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)