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AT2G44200.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : CBF1-interacting co-repressor CIR, N-terminal;Pre-mRNA splicing factor
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CBF1-interacting co-repressor CIR, N-terminal;Pre-mRNA splicing factor; CONTAINS InterPro DOMAIN/s: CBF1-interacting co-repressor CIR, N-terminal (InterPro:IPR019339), Pre-mRNA splicing factor (InterPro:IPR022209); BEST Arabidopsis thaliana protein match is: CBF1-interacting co-repressor CIR, N-terminal;Pre-mRNA splicing factor (TAIR:AT2G44195.1); Has 59661 Blast hits to 33745 proteins in 1751 species: Archae - 130; Bacteria - 4372; Metazoa - 27826; Fungi - 6422; Plants - 3866; Viruses - 275; Other Eukaryotes - 16770 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XSTAeggNOG:KOG3869EMBL:AC004005EMBL:AC004521
EMBL:AY045653EMBL:AY113037EMBL:CP002685EnsemblPlants:AT2G44200
EnsemblPlants:AT2G44200.1entrez:819028GeneID:819028Gramene:AT2G44200.1
hmmpanther:PTHR16196HOGENOM:HOG000242886InterPro:IPR019339InterPro:IPR022209
KEGG:ath:AT2G44200ncoils:CoilOMA:RRSEKNHPfam:PF10197
Pfam:PF12542PhylomeDB:O64855PIR:T00701Proteomes:UP000006548
RefSeq:NP_566014.1SMART:SM01083STRING:3702.AT2G44200.1TAIR:AT2G44200
UniGene:At.20853UniProt:O64855
Coordinates (TAIR10) chr2:+:18276302..18278240
Molecular Weight (calculated) 57787.40 Da
IEP (calculated) 10.16
GRAVY (calculated) -1.79
Length 493 amino acids
Sequence (TAIR10)
(BLAST)
001: MGMKFLNKKG WHTGSLRNIE TVWKAEQKQE AEQKKLEELR LQILQERERS EFRALQEQAG LIPRQERLEF LYDSGLAVGK GSASGSGVSF QKEEQPLAKS
101: EAGSSASEKP DQSAPGALFE EKAQSANDSW RKLHSDPLLL IRQREQEALA KIKNNPVKMA LIRKSVEEKG KGKDGDTKEH KKKHKRKSGK HQKQSSSRQR
201: SDSEEDSGEE NNGRKSHHQK TSGTHDRHYE RPRSDLEDES KGRESRDRHY EKRRSELDDG HKRRERHDTH YERRRSEMDD ESKRRESRDN HYERRRSDLD
301: DESKRRESHD KHFERQRSDL DDEYKRRESQ DKRRRSDIDD EPKRRDARPN EKYRNRSPKG GVERENLKSY GQEDKKRKAE DLDSGKPNEY QNRRRKGGSK
401: LSEEERAARL KQMQMDAEVH EEQRWTRLKK ADETDAVEAD KNKVSTGKSF LDDANKSVYG VEKGGSSTIE ESVRRRSYYS QRGTAAEGNA FRR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)