AT2G44200.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : CBF1-interacting co-repressor CIR, N-terminal;Pre-mRNA splicing factor | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
CBF1-interacting co-repressor CIR, N-terminal;Pre-mRNA splicing factor; CONTAINS InterPro DOMAIN/s: CBF1-interacting co-repressor CIR, N-terminal (InterPro:IPR019339), Pre-mRNA splicing factor (InterPro:IPR022209); BEST Arabidopsis thaliana protein match is: CBF1-interacting co-repressor CIR, N-terminal;Pre-mRNA splicing factor (TAIR:AT2G44195.1); Has 59661 Blast hits to 33745 proteins in 1751 species: Archae - 130; Bacteria - 4372; Metazoa - 27826; Fungi - 6422; Plants - 3866; Viruses - 275; Other Eukaryotes - 16770 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:18276302..18278240 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 57787.40 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.16 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.79 | ||||||||||||||||||||||||||||||||
| Length | 493 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGMKFLNKKG WHTGSLRNIE TVWKAEQKQE AEQKKLEELR LQILQERERS EFRALQEQAG LIPRQERLEF LYDSGLAVGK GSASGSGVSF QKEEQPLAKS 101: EAGSSASEKP DQSAPGALFE EKAQSANDSW RKLHSDPLLL IRQREQEALA KIKNNPVKMA LIRKSVEEKG KGKDGDTKEH KKKHKRKSGK HQKQSSSRQR 201: SDSEEDSGEE NNGRKSHHQK TSGTHDRHYE RPRSDLEDES KGRESRDRHY EKRRSELDDG HKRRERHDTH YERRRSEMDD ESKRRESRDN HYERRRSDLD 301: DESKRRESHD KHFERQRSDL DDEYKRRESQ DKRRRSDIDD EPKRRDARPN EKYRNRSPKG GVERENLKSY GQEDKKRKAE DLDSGKPNEY QNRRRKGGSK 401: LSEEERAARL KQMQMDAEVH EEQRWTRLKK ADETDAVEAD KNKVSTGKSF LDDANKSVYG VEKGGSSTIE ESVRRRSYYS QRGTAAEGNA FRR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)