AT2G27285.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Coiled-coil domain-containing protein 55 (DUF2040) | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Coiled-coil domain-containing protein 55 (DUF2040); EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2040, coiled-coil (InterPro:IPR018612); BEST Arabidopsis thaliana protein match is: Coiled-coil domain-containing protein 55 (DUF2040) (TAIR:AT2G27280.1); Has 40028 Blast hits to 25465 proteins in 1773 species: Archae - 338; Bacteria - 5536; Metazoa - 16890; Fungi - 2992; Plants - 1451; Viruses - 173; Other Eukaryotes - 12648 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:11676079..11677897 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 38086.80 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.98 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.43 | ||||||||||||||||||||||||||||||||
| Length | 323 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKKYGLQIRA PSQKKQSSSR PPLRPASIFD EEEDHDVEKE ISRQATKTKA HKEIEEQHKK ALEEDPSAFS YDEVYDDMKQ KAVLPRMQDR EERKPRYIQN 101: LMKQAERREK EHEIVYERKL AKEREKDEHL FSDKEKFVTG AYKRKLEEQK KWLAEERLRE LREERDDVTK KKDLSDFYFN IGKNVAFGAR EVEAKEAEKL 201: EEQRKAEKLE EQRKAEKLEE LRKEVTRVEK KRKSPEKEVS PDSGEFGSSR SKSLEPLEAE QAVSEKEMGS DGTEERKSSI KEAAKEVPKA INDQKRREDA 301: IAAAKERFLA RKKAKIEEYV QLG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)