AT1G17130.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Family of unknown function (DUF572) | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Family of unknown function (DUF572) ; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF572 (InterPro:IPR007590); BEST Arabidopsis thaliana protein match is: Family of unknown function (DUF572) (TAIR:AT2G32050.1); Has 1377 Blast hits to 1314 proteins in 254 species: Archae - 0; Bacteria - 51; Metazoa - 442; Fungi - 351; Plants - 150; Viruses - 5; Other Eukaryotes - 378 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:5854264..5856472 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 37640.20 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.69 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.02 | ||||||||||||||||||||||||||||||||
| Length | 331 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGERKVLNKY YPPDFDPAKL QRLRRPKNQQ IKVRMMLPMS VRCGTCGNYI YKGTKFNSRK EDVIGETYLG IQIFRFYFKC TKCSAELTMK TDPQNSDYIV 101: ESGASRNYEP WRAEDEEVDK DKQKRDAEEM GDAMKSLENR TLDSKREMDI IAALDEMKSM KSRHATVSVD AMLEALQRTG AEKVKRIEEE DEAVIKSIFG 201: KQKEVIRRIA DEEIDDDYDD DDIDDYPSLQ KEKKGSSSDL SKKRKATEVS PSNPTDILTS SSAENPKEPK KQAISKQPFK SVHIKVIKKQ PQPTSSSTPA 301: PAKPEEKKSD GAANTSLASL FQNYGSDEDE D |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)