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AT5G30490.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CONTAINS InterPro DOMAIN/s: Craniofacial development protein 1/Bucentaur (InterPro:IPR011421); Has 333 Blast hits to 324 proteins in 149 species: Archae - 0; Bacteria - 18; Metazoa - 117; Fungi - 96; Plants - 49; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111H9KeggNOG:KOG4776EMBL:AK118382EMBL:BT005254
EMBL:CP002688EnsemblPlants:AT5G30490EnsemblPlants:AT5G30490.1EnsemblPlants:AT5G30490.2
entrez:833136GeneID:833136Gramene:AT5G30490.1Gramene:AT5G30490.2
hmmpanther:PTHR23227HOGENOM:HOG000077545IntAct:Q8GX81InterPro:IPR011421
InterPro:IPR027124KEGG:ath:AT5G30490OMA:SSDQYLDPANTHER:PTHR23227
Pfam:PF07572Pfscan:PS51279PhylomeDB:Q8GX81PRO:PR:Q8GX81
PROSITE:PS51279Proteomes:UP000006548RefSeq:NP_001078630.1RefSeq:NP_850901.1
STRING:3702.AT5G30490.1TAIR:AT5G30490UniGene:At.30692UniProt:Q8GX81
Coordinates (TAIR10) chr5:+:11612199..11614271
Molecular Weight (calculated) 26062.40 Da
IEP (calculated) 9.47
GRAVY (calculated) -0.84
Length 236 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSHEQSPEN NGSSTVSKKV ADIWQRMNEG VPNKRVNFVS TALPAKNSAN SNWKSYLGVN VKKKDTCVSD VQKSVLNHSC SEEAKSIAAA ALAAVRNATV
101: TAAAASSRGK IEITEVKDFA GQEIEVKRLV EADSKEALER GNKGSSSSSA APSAVDAVLE QIKKKQKLSV LDKTKKDWGE YKEEHKGVED ELDKYKKSSD
201: QYLDKVGFLE RADYRQFEKE RDARLALQSK RRHDDV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)