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AT3G03880.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF1639)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF1639); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1639 (InterPro:IPR012438); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1639) (TAIR:AT1G55340.2); Has 237 Blast hits to 237 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 237; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JVB4eggNOG:ENOG411062EEMBL:BT002888EMBL:BT004399
EMBL:CP002686EnsemblPlants:AT3G03880EnsemblPlants:AT3G03880.1entrez:821095
GeneID:821095Gramene:AT3G03880.1hmmpanther:PTHR33130hmmpanther:PTHR33130:SF4
HOGENOM:HOG000240503InterPro:IPR012438KEGG:ath:AT3G03880OMA:PEKEERY
Pfam:PF07797PhylomeDB:Q84JV8Proteomes:UP000006548RefSeq:NP_187038.2
STRING:3702.AT3G03880.1TAIR:AT3G03880UniGene:At.43547UniProt:Q84JV8
Coordinates (TAIR10) chr3:+:998123..999029
Molecular Weight (calculated) 22113.60 Da
IEP (calculated) 10.74
GRAVY (calculated) -0.97
Length 193 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSSLEQEIF LQWGNKKRLR CLRAKAKKIS RSKNSSRFLG QDTVLLQSSR FSRGSEGAIL RSGLPDRRRP SPEKEERYYT TRGVVDNIGK DCLDGNINGE
101: DSNNKEESMW PKLFITLSNK EKEEDFMAMK GCKPSHRPKK RAKLIQRSLL LVSPGTWLAD LCPDRYDVRV KKSSKKRRAR GLKAMGNMET DSD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)