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AT1G68370.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Chaperone DnaJ-domain superfamily protein
Curator
Summary (TAIR10)
DnaJ-like protein with homology to coiled coils found in cytoskeleton-interacting proteins.
Computational
Description (TAIR10)
ALTERED RESPONSE TO GRAVITY 1 (ARG1); CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: ARG1-like 1 (TAIR:AT1G24120.1); Has 24672 Blast hits to 24665 proteins in 3308 species: Archae - 176; Bacteria - 9653; Metazoa - 4287; Fungi - 2463; Plants - 2622; Viruses - 27; Other Eukaryotes - 5444 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0484eggNOG:KOG0713EMBL:BT025556EnsemblPlants:AT1G68370
EnsemblPlants:AT1G68370.1entrez:843166ExpressionAtlas:Q1H5A8Gene3D:1.10.287.110
GeneID:843166Gramene:AT1G68370.1hmmpanther:PTHR24078hmmpanther:PTHR24078:SF267
InterPro:IPR001623InterPro:IPR018253KEGG:ath:AT1G68370ncoils:Coil
OMA:TYEDTTHPaxDb:Q1H5A8Pfam:PF00226Pfam:Q9ZSY2
Pfscan:PS50076PhylomeDB:Q1H5A8PRIDE:Q1H5A8PRINTS:PR00625
PROSITE:PS00636PROSITE:PS50076ProteinModelPortal:Q1H5A8RefSeq:NP_177004.1
scanprosite:PS00636SMART:SM00271SMR:Q1H5A8SMR:Q9ZSY2
STRING:3702.AT1G68370.1SUPFAM:SSF46565TAIR:AT1G68370tair10-symbols:ARG1
UniGene:At.11013UniProt:Q1H5A8UniProt:Q9ZSY2
Coordinates (TAIR10) chr1:-:25632046..25634527
Molecular Weight (calculated) 45486.30 Da
IEP (calculated) 6.54
GRAVY (calculated) -0.62
Length 410 amino acids
Sequence (TAIR10)
(BLAST)
001: MSAKKLEGSS APANRRDPYE VLCVSKDAND QEIKSAYRKL ALKYHPDKNA NNPDASELFK EVAFSYSILS DPEKRRHYDN AGFEALDADG MDMEIDLSNL
101: GTVNTMFAAL FSKLGVPIKT TVSANVLEEA MNGTVTVRPL PIGTSVSGKV EKQCAHFFGV TISEQQAESG VVVRVTSTAQ SKFKLLYFEQ DSSGGYGLAL
201: QEEREKTGKV TSAGMYFLHF QVYRMDTTVN ALAAAKDPES AFFKRLEGLQ PCEVSELKAG THIFAVYGDN FFKTASYTIE ALCAKTYEDT TEKLKEIEAQ
301: ILRKRNELRQ FETEYRKALA RFQEVTNRYT QEKQTVDELL KQRDTIHSTF SVVKTPSGNN LSNGSSSKAQ GDESKGDGDS AGEEGGTENR DKSKRKWFNL
401: NLKGSDKKLG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)