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AT4G34660.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : SH3 domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SH3 domain-containing protein; CONTAINS InterPro DOMAIN/s: Src homology-3 domain (InterPro:IPR001452); BEST Arabidopsis thaliana protein match is: SH3 domain-containing protein (TAIR:AT4G18060.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IIP7eggNOG:ENOG4110148EMBL:AF367774EMBL:AL023094
EMBL:AL161585EMBL:AY072132EMBL:AY087158EMBL:AY096478
EMBL:CP002687EnsemblPlants:AT4G34660EnsemblPlants:AT4G34660.1EnsemblPlants:AT4G34660.2
EnsemblPlants:AT4G34660.3entrez:829618ExpressionAtlas:Q8VWF1Gene3D:1.20.1270.60
GeneID:829618Genevisible:Q8VWF1GO:GO:0000421GO:GO:0005770
GO:GO:0005829GO:GO:0005886GO:GO:0030136hmmpanther:PTHR10663
hmmpanther:PTHR10663:SF163HOGENOM:HOG000242335IntAct:Q8VWF1InterPro:IPR001452
InterPro:IPR027267KEGG:ath:AT4G34660ncoils:CoilOMA:ASQTHNG
PaxDb:Q8VWF1Pfam:PF14604Pfscan:PS50002PhylomeDB:Q8VWF1
PIR:T05286PROSITE:PS50002ProteinModelPortal:Q8VWF1Proteomes:UP000006548
RefSeq:NP_001190913.1RefSeq:NP_001190914.1RefSeq:NP_567969.1SMART:SM00326
SMR:Q8VWF1STRING:3702.AT4G34660.1SUPFAM:SSF103657SUPFAM:SSF50044
TAIR:AT4G34660UniGene:At.2311UniProt:Q8VWF1
Coordinates (TAIR10) chr4:-:16545595..16548294
Molecular Weight (calculated) 40927.50 Da
IEP (calculated) 6.90
GRAVY (calculated) -0.61
Length 368 amino acids
Sequence (TAIR10)
(BLAST)
001: MDAIRKQASR LREQVARQQQ AVFKQFGGGG YGSGLADEAE LNQHQKLEKL YISTRAAKHY QRDIVRGVEG YIVTGSKQVE IGTKLSEDSR KYGSENTCTN
101: GNVLTRAALN YGRARAQMEK ERGNMLKALG TQVAEPLRAM VLGAPLEDAR HLAQRYDRMR QEAEAQATEV ARRQAKARES QGNPDILMKL ESAEAKLHDL
201: KSNMTILGKE AASALASVED QQQKLTLERL LSMVESERAY HQRVLQILDQ LEGEMVSERQ RIEAPSTPSS ADSMPPPPSY EEANGVFASQ MHDTSTDSMG
301: YFLGEVLFPY HGVTDVELSL STGEYVVVRK VTGSGWAEGE CKGKAGWFPY GYIERRERVL ASKVSEVF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)